Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0479.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li...    27   8.7  

>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
           protein F53B7.4 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 119 HIRPRYNNHTEVRNYHLQFLRSHTPNVLPYTKPXLWV*I-MYYITRTIHLIGHG*NKT*Y 295
           H RPR  N   +RN  +QF+    P      K  +W+ I M    R+I L  +    + Y
Sbjct: 74  HRRPRNPNEIILRNSDMQFIVDSKPKGYQLMKTPVWLTIPMNLNFRSILLFSNPKECSSY 133

Query: 296 --IGPPPFSQMSQVSKPCEVSALD 361
             I  P +S     SK C  S+L+
Sbjct: 134 ESIRCPEYSLCYNCSKYCFSSSLE 157


>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
           protein F31D5.5 protein.
          Length = 1788

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 215 VLCTVRRSGYGNAKIANDNSELLCDYYNEA*CDLCC 108
           +LC  R   Y   K++NDNSE    Y N   C   C
Sbjct: 619 LLCNDRTCTY-QLKVSNDNSEYFGVYVNNQICQQTC 653


>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
           protein MTH-1 protein.
          Length = 1757

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 215 VLCTVRRSGYGNAKIANDNSELLCDYYNEA*CDLCC 108
           +LC  R   Y   K++NDNSE    Y N   C   C
Sbjct: 588 LLCNDRTCTY-QLKVSNDNSEYFGVYVNNQICQQTC 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,455
Number of Sequences: 27780
Number of extensions: 296132
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)