Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0478.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    31   0.17 
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.1  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   5.0  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   6.6  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   6.6  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    26   6.6  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   8.7  

>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = -2

Query: 240 YFKEAIEIGKKLEMELGTMYVNLGRAYIKKKLLSEARKNCGLALKIGVMSKNKDVKEE 67
           Y+KE +E G+K E +L          Y+++K  +E +++  L +K   ++K  D+ +E
Sbjct: 452 YWKELLEEGRKFERQLCRNVFGRSSFYVQQKTAAEKKEHISLIMK--KLTKTLDLMKE 507


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 183 YVNLGRAYIKKKLLSEARKNCGLALKIGVMSKNKDVKEEA 64
           Y N+G AY  + LL +A+K C   LK  +  K  +V  E+
Sbjct: 51  YQNVGNAYKAEALLKDAKKQCE-TLKSALNGKLPEVNIES 89


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 217 WK-KT*NGVRYNVCEFRKSLHKEKIIVRSKKKLW 119
           W+ K  NG  Y +C+FR +L +E++I   K+ +W
Sbjct: 591 WRHKLENG--YRLCDFRGTLLREEMIGEFKQFIW 622


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 174  LGRAYIKKKLLSEARKNCGLALKIGVMSKNKDVK 73
            LGR Y+ KK    + +  G+AL +    +++D+K
Sbjct: 1130 LGRLYLAKKSFENSVEQAGIALDLLEGEEDEDIK 1163


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 165 AYIKKKLLSEARKNCGLALKIGVMSK 88
           AY+   LL    KNCG A ++ + SK
Sbjct: 62  AYLALNLLDICVKNCGYAFRLQIASK 87


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 225 IEIGKKLEMELGTMYVNLGRAYIKKKLLSEARKNCGLALKIGVMSKNKDVKEEA 64
           IEI K+    L  +  N G  + K       +KN  L L +   SK +++   A
Sbjct: 182 IEILKQFPNYLKAVEFNTGTTFFKSFKCLNIKKNSSLILSLHAFSKGRNINPVA 235


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 40  FYFLKTVFS--FLFNIFIFGHDP 102
           F+ L  +F   FLF++ +FG+DP
Sbjct: 472 FFILSFIFCLFFLFSLVLFGYDP 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,925
Number of Sequences: 5004
Number of extensions: 45428
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)