Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0478.Seq
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130...    29   3.9  
02_01_0637 + 4774333-4775262,4775636-4775829,4775947-4776250           29   3.9  
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662...    28   6.9  
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467           28   6.9  
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196...    28   6.9  
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059...    28   6.9  
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055     28   6.9  
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713     28   6.9  

>09_06_0108 -
           20912236-20912364,20912470-20912601,20912718-20913071,
           20913161-20913407,20913489-20913565,20913971-20914045,
           20914118-20914219,20914329-20914447,20914861-20914984,
           20915081-20915131,20915247-20915345,20915839-20915949
          Length = 539

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 254 MKVYITSKKQLKLEKNLKWS 195
           MKVY+T +++L +E +LKW+
Sbjct: 130 MKVYVTEEQELIMEPSLKWA 149


>02_01_0637 + 4774333-4775262,4775636-4775829,4775947-4776250
          Length = 475

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 652 LDKAKDLFVAVTQRIMADGATEDDFRVVHISTKLARISHLXKDYX--TAQWVMSGA*RN* 479
           +D A++  V V  RI  DG  E    + +I   +  + +   +    T QWVMS   RN 
Sbjct: 276 MDDAEEDLVDVLFRIQKDGGLEVPLTIGNIKAIILDLFNAGSETSANTLQWVMSELMRNP 335

Query: 478 K*LSKAILQRR 446
           K + KA  + R
Sbjct: 336 KVMRKAQAELR 346


>12_02_0035 -
           12563503-12564405,12564494-12565611,12565709-12566239,
           12566337-12567153
          Length = 1122

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 404 LFLDTNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDI 285
           L L+  +Y H L  + D LEK+    D+EKE +  + ND+
Sbjct: 772 LCLNDLKYRHPLSSISDELEKILITPDLEKEFL--EENDL 809


>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
          Length = 945

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 404 LFLDTNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDI 285
           L L+  +Y H L  + D LEK+    D+EKE +  + ND+
Sbjct: 595 LCLNDLKYRHPLSSIGDELEKVLITPDLEKEFL--EENDL 632


>06_03_1180 +
           28218386-28218649,28218725-28219202,28219309-28219697,
           28219785-28220426,28220466-28221368
          Length = 891

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 404 LFLDTNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDI 285
           L L+  +Y H L  + D LEK+    D+EKE +  + ND+
Sbjct: 541 LCLNDLKYRHPLSSIGDELEKVLITPDLEKEFL--EENDL 578


>02_05_0740 -
           31404004-31404180,31404365-31405261,31405351-31405978,
           31405997-31406468,31406575-31407052
          Length = 883

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 404 LFLDTNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDI 285
           L L+  +Y H L  + D LEK+    D+EKE +  + ND+
Sbjct: 476 LCLNDLKYRHPLSSIGDELEKVLITPDLEKEFL--EENDL 513


>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
          Length = 963

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 404 LFLDTNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDI 285
           L L+  +Y H L  + D LEK+    D+EKE +  + ND+
Sbjct: 595 LCLNDLKYRHPLSSIGDELEKILITPDLEKEFL--EENDL 632


>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
          Length = 946

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 404 LFLDTNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDI 285
           L L+  +Y H L  + D LEK+    D+EKE +  + ND+
Sbjct: 596 LCLNDLKYRHPLSSIGDELEKILITPDLEKEFL--EENDL 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,918
Number of Sequences: 37544
Number of extensions: 245143
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)