Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0478.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)                 32   0.43 
SB_58067| Best HMM Match : TPR_2 (HMM E-Value=0)                       29   4.0  
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_13407| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   28   7.0  
SB_27835| Best HMM Match : Bcl-2 (HMM E-Value=2.7e-31)                 28   7.0  
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)
          Length = 1329

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 431  ALAEDWYGRLFLDTNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDIGTVCDLLGKTM 252
            A A ++ G ++ D    E A  ++  SLE  + V + E   +   +ND+G V   LG+T 
Sbjct: 1122 AEALNFLGFMYRDHGNLEKAKKVLEHSLEIKEKVFNAEHFIVGEALNDLGVVYTRLGETE 1181

Query: 251  K 249
            K
Sbjct: 1182 K 1182


>SB_58067| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 593

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 204 EMELGTMYVNLGRAYIKKKLLSEARKNCGLALKIGVMSKNKDVKEEAENC 55
           +  LG +++N+G  + + K   +A K+ G AL +   +KN   +  A  C
Sbjct: 367 DQRLGDVHLNIGNTHYECKNYKDAMKHYGDALSLYKQTKNDKGEARAHVC 416


>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 204 EMELGTMYVNLGRAYIKKKLLSEARKNCGLALKIGVMSKNKDVKEEAENC 55
           +  LG +++N+G  + + K   +A K+ G AL +   +KN   +  A  C
Sbjct: 666 DQRLGDVHLNIGNTHYECKNYKDAMKHYGDALSLYKQTKNDKGEARAHVC 715


>SB_13407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 214 KKT*NGVRYNVCEFRKSLHKEKIIVRSKKKLWTGTKN 104
           K+  NG   ++C++RK L+K + +V++ +K +T   N
Sbjct: 157 KQISNGNETSICKYRKRLNKTRNVVQNLRKDYTPKHN 193


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 25  YLIQPFYFLKTVFSFLFNIFIF 90
           +++ P++FL  VF+F+  IFIF
Sbjct: 687 FVVYPYFFLFVVFAFVVFIFIF 708


>SB_27835| Best HMM Match : Bcl-2 (HMM E-Value=2.7e-31)
          Length = 202

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 356 DSLEKMQSVSDIEKEHIATQMNDIGTVCD 270
           D+LE+++S +D  ++HIAT    +G V D
Sbjct: 60  DALEELRSCNDTSRQHIATIGRRLGEVGD 88


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 479 EIIIKSDPSEEKMKLFALAEDWYGRLFLDTNQYEHALXLMXDSLEKMQ 336
           E + ++   E+  ++ AL E W  +L  D  Q+E  +    +SL+  Q
Sbjct: 281 ESVPRNRTEEDGFRMSALEEMWERKLAQDREQFEKLMEFQRESLQVQQ 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,853,928
Number of Sequences: 59808
Number of extensions: 303221
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)