Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0478.Seq
(748 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC112107-1|AAI12108.1| 501|Homo sapiens tetratricopeptide repea... 55 3e-07
BC105128-1|AAI05129.1| 501|Homo sapiens tetratricopeptide repea... 55 3e-07
BC073796-1|AAH73796.1| 384|Homo sapiens TTC19 protein protein. 55 3e-07
BC011698-1|AAH11698.2| 382|Homo sapiens TTC19 protein protein. 55 3e-07
AK000350-1|BAA91103.1| 273|Homo sapiens protein ( Homo sapiens ... 55 3e-07
BC030146-1|AAH30146.1| 717|Homo sapiens RNA binding motif prote... 33 1.1
AK025571-1|BAB15173.1| 727|Homo sapiens osaminidase mRNA. prot... 33 1.1
Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein. 31 5.8
AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein p... 31 5.8
>BC112107-1|AAI12108.1| 501|Homo sapiens tetratricopeptide repeat
domain 19 protein.
Length = 501
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -1
Query: 742 SLXKPHQMQHQLAITYIYDVMANLALERXHLDKAKDLFVAVTQRIMADGATEDDFRVVHI 563
+L +Q ++ AITY YD+MANLA R L+ A+ LF A ++ G ++D ++ I
Sbjct: 243 ALRLAYQTDNKKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGMKQEDNAIIEI 302
Query: 562 STKLARI 542
S KLA I
Sbjct: 303 SLKLASI 309
>BC105128-1|AAI05129.1| 501|Homo sapiens tetratricopeptide repeat
domain 19 protein.
Length = 501
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -1
Query: 742 SLXKPHQMQHQLAITYIYDVMANLALERXHLDKAKDLFVAVTQRIMADGATEDDFRVVHI 563
+L +Q ++ AITY YD+MANLA R L+ A+ LF A ++ G ++D ++ I
Sbjct: 243 ALRLAYQTDNKKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGMKQEDNAIIEI 302
Query: 562 STKLARI 542
S KLA I
Sbjct: 303 SLKLASI 309
>BC073796-1|AAH73796.1| 384|Homo sapiens TTC19 protein protein.
Length = 384
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -1
Query: 742 SLXKPHQMQHQLAITYIYDVMANLALERXHLDKAKDLFVAVTQRIMADGATEDDFRVVHI 563
+L +Q ++ AITY YD+MANLA R L+ A+ LF A ++ G ++D ++ I
Sbjct: 126 ALRLAYQTDNKKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGMKQEDNAIIEI 185
Query: 562 STKLARI 542
S KLA I
Sbjct: 186 SLKLASI 192
>BC011698-1|AAH11698.2| 382|Homo sapiens TTC19 protein protein.
Length = 382
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -1
Query: 742 SLXKPHQMQHQLAITYIYDVMANLALERXHLDKAKDLFVAVTQRIMADGATEDDFRVVHI 563
+L +Q ++ AITY YD+MANLA R L+ A+ LF A ++ G ++D ++ I
Sbjct: 124 ALRLAYQTDNKKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGMKQEDNAIIEI 183
Query: 562 STKLARI 542
S KLA I
Sbjct: 184 SLKLASI 190
>AK000350-1|BAA91103.1| 273|Homo sapiens protein ( Homo sapiens
cDNA FLJ20343 fis, clone HEP13649. ).
Length = 273
Score = 54.8 bits (126), Expect = 3e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -1
Query: 742 SLXKPHQMQHQLAITYIYDVMANLALERXHLDKAKDLFVAVTQRIMADGATEDDFRVVHI 563
+L +Q ++ AITY YD+MANLA R L+ A+ LF A ++ G ++D ++ I
Sbjct: 15 ALRLAYQTDNKKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGMKQEDNAIIEI 74
Query: 562 STKLARI 542
S KLA I
Sbjct: 75 SLKLASI 81
>BC030146-1|AAH30146.1| 717|Homo sapiens RNA binding motif protein
35B protein.
Length = 717
Score = 33.1 bits (72), Expect = 1.1
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 691 YDVMANLALERXHLDKAKDLFVA-VTQRI-MADGATEDDFRVVHISTKLARISHLXKD 524
YD+ ++ A+DL VA + Q + + ATEDDF V + T +A I HL K+
Sbjct: 159 YDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTMVAVILHLLKE 216
>AK025571-1|BAB15173.1| 727|Homo sapiens osaminidase mRNA.
protein.
Length = 727
Score = 33.1 bits (72), Expect = 1.1
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 691 YDVMANLALERXHLDKAKDLFVA-VTQRI-MADGATEDDFRVVHISTKLARISHLXKD 524
YD+ ++ A+DL VA + Q + + ATEDDF V + T +A I HL K+
Sbjct: 159 YDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTMVAVILHLLKE 216
>Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.
Length = 2663
Score = 30.7 bits (66), Expect = 5.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -3
Query: 392 TNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDIGTVCDLLGKTMKVYITSKKQLK 219
T + + L L+ D L+K Q + EK H + ++ CD L + + +QL+
Sbjct: 1080 TIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQ 1137
>AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein
protein.
Length = 2585
Score = 30.7 bits (66), Expect = 5.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -3
Query: 392 TNQYEHALXLMXDSLEKMQSVSDIEKEHIATQMNDIGTVCDLLGKTMKVYITSKKQLK 219
T + + L L+ D L+K Q + EK H + ++ CD L + + +QL+
Sbjct: 1060 TIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQ 1117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,536,303
Number of Sequences: 237096
Number of extensions: 1486828
Number of successful extensions: 2758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2750
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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