Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0478.Seq
         (748 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071630-1|AAL49252.1|  369|Drosophila melanogaster RE67616p pro...    67   3e-11
AE014134-3022|AAF53745.2|  369|Drosophila melanogaster CG15173-P...    67   3e-11

>AY071630-1|AAL49252.1|  369|Drosophila melanogaster RE67616p
           protein.
          Length = 369

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 30/73 (41%), Positives = 49/73 (67%)
 Frame = -1

Query: 742 SLXKPHQMQHQLAITYIYDVMANLALERXHLDKAKDLFVAVTQRIMADGATEDDFRVVHI 563
           +L     +Q +  ITY++D+MANLA+ER    KA+ +F  V +R+ A+G TE+  +++HI
Sbjct: 123 ALRMAQDIQSKDGITYVFDLMANLAMEREQFKKAEKIFTDVMKRLFAEGHTEESPKILHI 182

Query: 562 STKLARISHLXKD 524
           S+K+A +S L  D
Sbjct: 183 SSKIAHMSQLQGD 195



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
 Frame = -2

Query: 252 ESXHYFKEAIEIGKKLE--MELGTMYVNLGRAYIKKKLLSEARKNCGLALKIGVMSKNKD 79
           E+     EA+E+ K+L+   + G +  NLG  Y+++ L+S+A   C LA K+G   +N D
Sbjct: 288 EARETLLEAMELTKELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPD 347

Query: 78  VKEEAENCFQEIK 40
             E+AE C  EIK
Sbjct: 348 AVEQAEYCLNEIK 360


>AE014134-3022|AAF53745.2|  369|Drosophila melanogaster CG15173-PA
           protein.
          Length = 369

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 30/73 (41%), Positives = 49/73 (67%)
 Frame = -1

Query: 742 SLXKPHQMQHQLAITYIYDVMANLALERXHLDKAKDLFVAVTQRIMADGATEDDFRVVHI 563
           +L     +Q +  ITY++D+MANLA+ER    KA+ +F  V +R+ A+G TE+  +++HI
Sbjct: 123 ALRMAQDIQSKDGITYVFDLMANLAMEREQFKKAEKIFTDVMKRLFAEGHTEESPKILHI 182

Query: 562 STKLARISHLXKD 524
           S+K+A +S L  D
Sbjct: 183 SSKIAHMSQLQGD 195



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
 Frame = -2

Query: 252 ESXHYFKEAIEIGKKLE--MELGTMYVNLGRAYIKKKLLSEARKNCGLALKIGVMSKNKD 79
           E+     EA+E+ K+L+   + G +  NLG  Y+++ L+S+A   C LA K+G   +N D
Sbjct: 288 EARETLLEAMELTKELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPD 347

Query: 78  VKEEAENCFQEIK 40
             E+AE C  EIK
Sbjct: 348 AVEQAEYCLNEIK 360


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,984,159
Number of Sequences: 53049
Number of extensions: 445344
Number of successful extensions: 900
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)