Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0478.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20990.1 68415.m02485 C2 domain-containing protein (sytA) sim...    29   4.3  
At1g20080.1 68414.m02513 C2 domain-containing protein contains I...    28   5.7  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    28   7.6  
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica...    28   7.6  

>At2g20990.1 68415.m02485 C2 domain-containing protein (sytA)
           similar to Ca2+-dependent lipid-binding protein (CLB1)
           GI:2789434 from [Lycopersicon esculentum]
          Length = 541

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 254 MKVYITSKKQLKLEKNLKWS 195
           MKVY+T +K+L +E  LKW+
Sbjct: 130 MKVYLTDEKELIMEPCLKWA 149


>At1g20080.1 68414.m02513 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 535

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = -3

Query: 419 DWYGRLFLDTNQY-EHALXLMXDSLEK---MQSVSDIEKEHIATQMNDIGTVCDLLGKTM 252
           DW  +L      Y + A+  M  S+ K    + + + + + +  +M  +G++     + M
Sbjct: 70  DWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPSF-QGM 128

Query: 251 KVYITSKKQLKLEKNLKWS 195
           KVY T  K++ +E ++KW+
Sbjct: 129 KVYATDDKEIIMELSVKWA 147


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 485 SLSTTHNPLSSXIILXQVTYSC*LCTDMNNSKIIFSCTISHDSLSDSNKKV 637
           S S T N L S +   +V +   L  D ++   I    +  DSLSD+ KKV
Sbjct: 536 SFSKTVNSLRSEVDSSRVDFDKNLSYDQDHGVEIGDIVVEEDSLSDAWKKV 586


>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to RUSH-1alpha [Oryctolagus cuniculus]
           GI:1655930; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1226

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 581 FSSCSYQYKVSKNKSPXKGLSNCSVGYE 498
           +S CS  + V     P  G+SNC++ Y+
Sbjct: 343 YSRCSDVHTVGGTTLPWSGVSNCAISYQ 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,823,712
Number of Sequences: 28952
Number of extensions: 222651
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)