Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0476.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.3  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.1  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   9.4  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 465 PTTRRCLYACLLTAHPVSWSLY 530
           P+  +C YACLL    + W +Y
Sbjct: 41  PSLAKC-YACLLMVVKILWVIY 61


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 293 SKGVQYLNEIKDSVVXGFQ 349
           SK ++Y+N + D  V GF+
Sbjct: 183 SKIIEYMNHLVDLGVAGFR 201


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 293 SKGVQYLNEIKDSVVXGFQ 349
           SK ++Y+N + D  V GF+
Sbjct: 184 SKIIEYMNHLVDLGVAGFR 202


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 293 SKGVQYLNEIKDSVVXGFQ 349
           SK ++Y+N + D  V GF+
Sbjct: 184 SKIIEYMNHLVDLGVAGFR 202


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 MTSRLALGILQKSTNTMLPK 234
           +T+ L +  L  STN  LPK
Sbjct: 104 VTTVLTMTTLMSSTNAALPK 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,275
Number of Sequences: 336
Number of extensions: 2974
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)