BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0476.Seq (548 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0662 + 30987187-30987277,30987825-30990214 157 4e-39 04_01_0103 + 1082077-1082167,1083037-1085477 152 2e-37 02_04_0017 + 18937774-18937864,18938505-18940945 152 2e-37 01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 128 4e-30 06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 103 7e-23 09_04_0276 - 16306894-16307526,16307556-16308572 30 1.4 04_01_0330 - 4369326-4370852 30 1.4 07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 29 3.2 02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 29 3.2 04_01_0119 + 1235573-1235680,1236205-1236296,1237263-1237360,123... 28 4.3 11_06_0282 - 21884702-21885085 27 7.5 10_05_0024 + 8203010-8203948,8204042-8204683 27 7.5 10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 27 7.5 09_04_0278 + 16333261-16334172,16334900-16335532 27 9.9 08_02_0897 - 22362136-22363698 27 9.9 03_05_0985 - 29424698-29425183 27 9.9 03_01_0179 - 1443508-1443624,1443712-1443773,1444904-1444971,144... 27 9.9 02_05_0921 + 32739495-32739696,32739815-32740002,32740132-327403... 27 9.9 >01_06_0662 + 30987187-30987277,30987825-30990214 Length = 826 Score = 157 bits (382), Expect = 4e-39 Identities = 89/187 (47%), Positives = 113/187 (60%), Gaps = 6/187 (3%) Frame = +3 Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185 I S PVVS+RETV E+S + +SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K Sbjct: 551 ITVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPK 610 Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPK--EFSTSMK---LRTLLXLDSS 350 R++ L+E++ +D A+KIWCF P P K ++ +K + Sbjct: 611 VRSKILSEEFGWDKDLAKKIWCFGPETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKE 670 Query: 351 GPLRKELWLKR-ICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSL 527 G L +E R IC F + DV LH+DAIHRGGGQIIPT RR +YA LTA P Sbjct: 671 GALAEENMRGRGIC----FEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKPRLLEP 726 Query: 528 YIFCEIQ 548 EIQ Sbjct: 727 VYLVEIQ 733 Score = 85.8 bits (203), Expect = 2e-17 Identities = 47/96 (48%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Frame = +2 Query: 257 PEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL*CNTPY*C 436 PE TGPNI+VD KGVQYLNEIKDSVV GFQWA+KEG +AEEN+RG I C+ Sbjct: 635 PETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVILHS 694 Query: 437 HP*RWWPNH--SNN*KMLVRMSANCSPRLMEPVYLL 538 +++ PRL+EPVYL+ Sbjct: 695 DAIHRGGGQIIPTARRVIYAAQLTAKPRLLEPVYLV 730 >04_01_0103 + 1082077-1082167,1083037-1085477 Length = 843 Score = 152 bits (369), Expect = 2e-37 Identities = 78/181 (43%), Positives = 107/181 (59%) Frame = +3 Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185 I S PVVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K Sbjct: 555 IIVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 614 Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365 R++ L+E++ +D A+KIWCF P P K +++ + ++ Sbjct: 615 VRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674 Query: 366 ELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCEI 545 + + F + DV LH DAIHRGGGQ+IPT RR +YA LTA P EI Sbjct: 675 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 734 Query: 546 Q 548 Q Sbjct: 735 Q 735 >02_04_0017 + 18937774-18937864,18938505-18940945 Length = 843 Score = 152 bits (369), Expect = 2e-37 Identities = 78/181 (43%), Positives = 107/181 (59%) Frame = +3 Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185 I S PVVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K Sbjct: 555 IIVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 614 Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365 R++ L+E++ +D A+KIWCF P P K +++ + ++ Sbjct: 615 VRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674 Query: 366 ELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCEI 545 + + F + DV LH DAIHRGGGQ+IPT RR +YA LTA P EI Sbjct: 675 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 734 Query: 546 Q 548 Q Sbjct: 735 Q 735 >01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 Length = 853 Score = 128 bits (308), Expect = 4e-30 Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 8/172 (4%) Frame = +3 Query: 21 PVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP-DGLPED-------IDEGRVNPRD 176 P+++YRETV + S + +SKSPNKHNRL+M+A+P+ + L +D ID+ R+ P+D Sbjct: 562 PIITYRETVTKNSCRTVMSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKD 621 Query: 177 DFKTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGP 356 D K R + L+E++ +D A+KIW F P P K +++ + Sbjct: 622 DIKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWA 681 Query: 357 LRKELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 512 ++ + + F + DVTLH+D+IHRGGGQ+IPT RR +YA LTA P Sbjct: 682 SKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASP 733 Score = 82.2 bits (194), Expect = 2e-16 Identities = 36/50 (72%), Positives = 42/50 (84%) Frame = +2 Query: 257 PEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQ 406 PE GPN+LVD KGVQYL+EIKDSVV GFQWA+KEG +AEEN+RGV + Sbjct: 649 PETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKEGALAEENMRGVCFE 698 >06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017, 23824124-23824322,23824410-23824495,23824940-23825098, 23825204-23825302,23825385-23826578,23826666-23826734, 23828042-23828812 Length = 997 Score = 103 bits (248), Expect = 7e-23 Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 7/185 (3%) Frame = +3 Query: 15 SDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRA 194 +DPVV++ ETV + S C +++PNK N++ M A+P+ GL EDI+ G V+ K Sbjct: 680 ADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEIT 739 Query: 195 RYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRKELW 374 + ++Y++DV AR IW F P P + S + + LL ++ W Sbjct: 740 DFFRQRYQWDVLAARSIWAFGPEKQGPNI--LLDDTLSVEVD-KNLLNAVKDSIVQGFQW 796 Query: 375 LKR---ICVV----LXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYI 533 R +C + F I + + + +HRGGGQIIPT RR +Y+ L A+P Sbjct: 797 GAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPRLMEPVY 856 Query: 534 FCEIQ 548 + EIQ Sbjct: 857 YIEIQ 861 Score = 57.2 bits (132), Expect = 8e-09 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 6/100 (6%) Frame = +2 Query: 257 PEGTGPNILVDCSKGVQY----LNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL*CN- 421 PE GPNIL+D + V+ LN +KDS+V GFQW A+EG + +E +R V + L N Sbjct: 761 PEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANI 820 Query: 422 TPY*CHP*RWWPNHSNN*KMLVRMS-ANCSPRLMEPVYLL 538 P H R + +V + +PRLMEPVY + Sbjct: 821 APEPLH--RGGGQIIPTARRVVYSAFLMANPRLMEPVYYI 858 >09_04_0276 - 16306894-16307526,16307556-16308572 Length = 549 Score = 29.9 bits (64), Expect = 1.4 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +2 Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382 D L P G+G + S G++ + S++ GF+W +GV A E Sbjct: 470 DFQLLPFGSGRRLCPGHSLGLKVIQLSLASLLHGFEWRLPDGVSAGE 516 >04_01_0330 - 4369326-4370852 Length = 508 Score = 29.9 bits (64), Expect = 1.4 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 469 VGMIWPPPLWMASVWSVTS 413 +G IWPPP+W S TS Sbjct: 487 IGKIWPPPVWFKRCTSATS 505 >07_03_1219 + 24960043-24960133,24960304-24960336,24962258-24962486, 24963183-24963309,24963530-24963869,24964806-24965095 Length = 369 Score = 28.7 bits (61), Expect = 3.2 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 54 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPE 143 E + LCL PN+H + + A+ +P LPE Sbjct: 42 EKENLCLYGFPNEHWEVNLPAEEVPPELPE 71 >02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 Length = 778 Score = 28.7 bits (61), Expect = 3.2 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 264 VPAPTSWWIAPKEFSTSMKLRTLLXLDSSG 353 VP+P WW P S + RT L S+G Sbjct: 589 VPSPMPWWCRPSSVSRDGEARTELNPSSAG 618 >04_01_0119 + 1235573-1235680,1236205-1236296,1237263-1237360, 1237470-1237625,1238618-1238637 Length = 157 Score = 28.3 bits (60), Expect = 4.3 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 286 HQDVGAGTLGAKHQILRASVTSYSYFSVRYRARVLKS 176 H D+ A LG+K L + V SY Y + AR+ K+ Sbjct: 57 HHDMLASVLGSKEAALESIVYSYRYSFSGFAARLTKA 93 >11_06_0282 - 21884702-21885085 Length = 127 Score = 27.5 bits (58), Expect = 7.5 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +3 Query: 144 DIDEGRVNPRDDFKTRARYLTEKYEYDVTEARK 242 ++D G V+P DDF ++ Y+ + D+ RK Sbjct: 43 EVDAGVVDPDDDFYYKSLYVLHESSKDLRHVRK 75 >10_05_0024 + 8203010-8203948,8204042-8204683 Length = 526 Score = 27.5 bits (58), Expect = 7.5 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = +2 Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382 D L P G G I S G++ + + ++V GF W G ++ Sbjct: 448 DFGLIPFGAGRRICAGLSWGLRMVTLMTATLVHGFDWTLANGATPDK 494 >10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018, 3532276-3532569,3557747-3557941,3558875-3559095, 3559190-3559373,3559797-3559973,3561319-3561824, 3561880-3562060 Length = 917 Score = 27.5 bits (58), Expect = 7.5 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -2 Query: 427 WSVTS*MLNXNTTQILFSHNSFLSGPLESXHNRVLNFIEVLNSFGAIHQ 281 WS+ + + I+ S+N L G LES H+R L+ V A+H+ Sbjct: 641 WSLYAINIAHRRVDIMDSNNYNLIGTLESDHHRALSKRIVKRLSDALHE 689 >09_04_0278 + 16333261-16334172,16334900-16335532 Length = 514 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +2 Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382 D L P G+G + S G++ + +++ GF W +GV E+ Sbjct: 435 DFELLPFGSGRRMCPGYSLGLKVIQLSLANLLHGFAWRLPDGVTREQ 481 >08_02_0897 - 22362136-22363698 Length = 520 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +2 Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382 D L P G+G + + G++ + +++ GF W EG+ EE Sbjct: 442 DFELLPFGSGRRMCPGYNLGLKVMQLSLANLLHGFAWRLPEGMKEEE 488 >03_05_0985 - 29424698-29425183 Length = 161 Score = 27.1 bits (57), Expect = 9.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 141 EDIDEGRVNPRDDFKTRARYLTEKY 215 ED D G ++PR D K R+L KY Sbjct: 8 EDEDLGIIDPRSDDKALKRHLLRKY 32 >03_01_0179 - 1443508-1443624,1443712-1443773,1444904-1444971, 1445811-1445868,1446439-1446629,1447164-1447359, 1448396-1448609 Length = 301 Score = 27.1 bits (57), Expect = 9.9 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 1/89 (1%) Frame = +1 Query: 22 LSCRTVRP*LRNRTSSVSQSRPTSTTVYS*RLSPCLMVCQRTLMRVA*IPAMTSRLAL-G 198 + CRT + S S+SRP TT + C C ++++ I + L Sbjct: 200 VECRTSHLHCNTQDGSTSRSRPGRTTKH----PGCFQACPLNYLQISVITTDPKNILLRH 255 Query: 199 ILQKSTNTMLPKPVRFGALPRGYRPQHPG 285 QKS + PK A P PQ+ G Sbjct: 256 FYQKSEEKLRPK----RAAPDNLTPQNNG 280 >02_05_0921 + 32739495-32739696,32739815-32740002,32740132-32740330, 32740426-32740604,32740760-32740910,32741165-32741298, 32741436-32741615 Length = 410 Score = 27.1 bits (57), Expect = 9.9 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = +3 Query: 384 ICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFC 539 I L F + + ++ G ++ P LY+ +L+A V +LYI+C Sbjct: 192 IMATLGFQVLIQAIEQLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYC 243 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,137,925 Number of Sequences: 37544 Number of extensions: 358142 Number of successful extensions: 1096 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1085 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1233951264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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