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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0476.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0662 + 30987187-30987277,30987825-30990214                      157   4e-39
04_01_0103 + 1082077-1082167,1083037-1085477                          152   2e-37
02_04_0017 + 18937774-18937864,18938505-18940945                      152   2e-37
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912    128   4e-30
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...   103   7e-23
09_04_0276 - 16306894-16307526,16307556-16308572                       30   1.4  
04_01_0330 - 4369326-4370852                                           30   1.4  
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624...    29   3.2  
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     29   3.2  
04_01_0119 + 1235573-1235680,1236205-1236296,1237263-1237360,123...    28   4.3  
11_06_0282 - 21884702-21885085                                         27   7.5  
10_05_0024 + 8203010-8203948,8204042-8204683                           27   7.5  
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    27   7.5  
09_04_0278 + 16333261-16334172,16334900-16335532                       27   9.9  
08_02_0897 - 22362136-22363698                                         27   9.9  
03_05_0985 - 29424698-29425183                                         27   9.9  
03_01_0179 - 1443508-1443624,1443712-1443773,1444904-1444971,144...    27   9.9  
02_05_0921 + 32739495-32739696,32739815-32740002,32740132-327403...    27   9.9  

>01_06_0662 + 30987187-30987277,30987825-30990214
          Length = 826

 Score =  157 bits (382), Expect = 4e-39
 Identities = 89/187 (47%), Positives = 113/187 (60%), Gaps = 6/187 (3%)
 Frame = +3

Query: 6    IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
            I  S PVVS+RETV E+S +  +SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K
Sbjct: 551  ITVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPK 610

Query: 186  TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPK--EFSTSMK---LRTLLXLDSS 350
             R++ L+E++ +D   A+KIWCF P    P       K  ++   +K   +         
Sbjct: 611  VRSKILSEEFGWDKDLAKKIWCFGPETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKE 670

Query: 351  GPLRKELWLKR-ICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSL 527
            G L +E    R IC    F + DV LH+DAIHRGGGQIIPT RR +YA  LTA P     
Sbjct: 671  GALAEENMRGRGIC----FEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKPRLLEP 726

Query: 528  YIFCEIQ 548
                EIQ
Sbjct: 727  VYLVEIQ 733



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 47/96 (48%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
 Frame = +2

Query: 257 PEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL*CNTPY*C 436
           PE TGPNI+VD  KGVQYLNEIKDSVV GFQWA+KEG +AEEN+RG  I    C+     
Sbjct: 635 PETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVILHS 694

Query: 437 HP*RWWPNH--SNN*KMLVRMSANCSPRLMEPVYLL 538
                          +++        PRL+EPVYL+
Sbjct: 695 DAIHRGGGQIIPTARRVIYAAQLTAKPRLLEPVYLV 730


>04_01_0103 + 1082077-1082167,1083037-1085477
          Length = 843

 Score =  152 bits (369), Expect = 2e-37
 Identities = 78/181 (43%), Positives = 107/181 (59%)
 Frame = +3

Query: 6    IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
            I  S PVVS+RETV E+S +  +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K
Sbjct: 555  IIVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 614

Query: 186  TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365
             R++ L+E++ +D   A+KIWCF P    P       K      +++  +        ++
Sbjct: 615  VRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674

Query: 366  ELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCEI 545
                +     + F + DV LH DAIHRGGGQ+IPT RR +YA  LTA P         EI
Sbjct: 675  GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 734

Query: 546  Q 548
            Q
Sbjct: 735  Q 735


>02_04_0017 + 18937774-18937864,18938505-18940945
          Length = 843

 Score =  152 bits (369), Expect = 2e-37
 Identities = 78/181 (43%), Positives = 107/181 (59%)
 Frame = +3

Query: 6    IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
            I  S PVVS+RETV E+S +  +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K
Sbjct: 555  IIVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 614

Query: 186  TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365
             R++ L+E++ +D   A+KIWCF P    P       K      +++  +        ++
Sbjct: 615  VRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674

Query: 366  ELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCEI 545
                +     + F + DV LH DAIHRGGGQ+IPT RR +YA  LTA P         EI
Sbjct: 675  GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 734

Query: 546  Q 548
            Q
Sbjct: 735  Q 735


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score =  128 bits (308), Expect = 4e-30
 Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
 Frame = +3

Query: 21   PVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP-DGLPED-------IDEGRVNPRD 176
            P+++YRETV + S +  +SKSPNKHNRL+M+A+P+  + L +D       ID+ R+ P+D
Sbjct: 562  PIITYRETVTKNSCRTVMSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKD 621

Query: 177  DFKTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGP 356
            D K R + L+E++ +D   A+KIW F P    P       K      +++  +       
Sbjct: 622  DIKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWA 681

Query: 357  LRKELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 512
             ++    +     + F + DVTLH+D+IHRGGGQ+IPT RR +YA  LTA P
Sbjct: 682  SKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASP 733



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 36/50 (72%), Positives = 42/50 (84%)
 Frame = +2

Query: 257 PEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQ 406
           PE  GPN+LVD  KGVQYL+EIKDSVV GFQWA+KEG +AEEN+RGV  +
Sbjct: 649 PETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKEGALAEENMRGVCFE 698


>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
            23824124-23824322,23824410-23824495,23824940-23825098,
            23825204-23825302,23825385-23826578,23826666-23826734,
            23828042-23828812
          Length = 997

 Score =  103 bits (248), Expect = 7e-23
 Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
 Frame = +3

Query: 15   SDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRA 194
            +DPVV++ ETV + S   C +++PNK N++ M A+P+  GL EDI+ G V+     K   
Sbjct: 680  ADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEIT 739

Query: 195  RYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRKELW 374
             +  ++Y++DV  AR IW F P    P    +     S  +  + LL       ++   W
Sbjct: 740  DFFRQRYQWDVLAARSIWAFGPEKQGPNI--LLDDTLSVEVD-KNLLNAVKDSIVQGFQW 796

Query: 375  LKR---ICVV----LXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYI 533
              R   +C      + F I +  +  + +HRGGGQIIPT RR +Y+  L A+P       
Sbjct: 797  GAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPRLMEPVY 856

Query: 534  FCEIQ 548
            + EIQ
Sbjct: 857  YIEIQ 861



 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
 Frame = +2

Query: 257  PEGTGPNILVDCSKGVQY----LNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL*CN- 421
            PE  GPNIL+D +  V+     LN +KDS+V GFQW A+EG + +E +R V  + L  N 
Sbjct: 761  PEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANI 820

Query: 422  TPY*CHP*RWWPNHSNN*KMLVRMS-ANCSPRLMEPVYLL 538
             P   H  R         + +V  +    +PRLMEPVY +
Sbjct: 821  APEPLH--RGGGQIIPTARRVVYSAFLMANPRLMEPVYYI 858


>09_04_0276 - 16306894-16307526,16307556-16308572
          Length = 549

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
           D  L P G+G  +    S G++ +     S++ GF+W   +GV A E
Sbjct: 470 DFQLLPFGSGRRLCPGHSLGLKVIQLSLASLLHGFEWRLPDGVSAGE 516


>04_01_0330 - 4369326-4370852
          Length = 508

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 469 VGMIWPPPLWMASVWSVTS 413
           +G IWPPP+W     S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505


>07_03_1219 +
           24960043-24960133,24960304-24960336,24962258-24962486,
           24963183-24963309,24963530-24963869,24964806-24965095
          Length = 369

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 54  ESDQLCLSKSPNKHNRLFMKAQPMPDGLPE 143
           E + LCL   PN+H  + + A+ +P  LPE
Sbjct: 42  EKENLCLYGFPNEHWEVNLPAEEVPPELPE 71


>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 264 VPAPTSWWIAPKEFSTSMKLRTLLXLDSSG 353
           VP+P  WW  P   S   + RT L   S+G
Sbjct: 589 VPSPMPWWCRPSSVSRDGEARTELNPSSAG 618


>04_01_0119 +
           1235573-1235680,1236205-1236296,1237263-1237360,
           1237470-1237625,1238618-1238637
          Length = 157

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 286 HQDVGAGTLGAKHQILRASVTSYSYFSVRYRARVLKS 176
           H D+ A  LG+K   L + V SY Y    + AR+ K+
Sbjct: 57  HHDMLASVLGSKEAALESIVYSYRYSFSGFAARLTKA 93


>11_06_0282 - 21884702-21885085
          Length = 127

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 144 DIDEGRVNPRDDFKTRARYLTEKYEYDVTEARK 242
           ++D G V+P DDF  ++ Y+  +   D+   RK
Sbjct: 43  EVDAGVVDPDDDFYYKSLYVLHESSKDLRHVRK 75


>10_05_0024 + 8203010-8203948,8204042-8204683
          Length = 526

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
           D  L P G G  I    S G++ +  +  ++V GF W    G   ++
Sbjct: 448 DFGLIPFGAGRRICAGLSWGLRMVTLMTATLVHGFDWTLANGATPDK 494


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 427 WSVTS*MLNXNTTQILFSHNSFLSGPLESXHNRVLNFIEVLNSFGAIHQ 281
           WS+ +  +      I+ S+N  L G LES H+R L+   V     A+H+
Sbjct: 641 WSLYAINIAHRRVDIMDSNNYNLIGTLESDHHRALSKRIVKRLSDALHE 689


>09_04_0278 + 16333261-16334172,16334900-16335532
          Length = 514

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
           D  L P G+G  +    S G++ +     +++ GF W   +GV  E+
Sbjct: 435 DFELLPFGSGRRMCPGYSLGLKVIQLSLANLLHGFAWRLPDGVTREQ 481


>08_02_0897 - 22362136-22363698
          Length = 520

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
           D  L P G+G  +    + G++ +     +++ GF W   EG+  EE
Sbjct: 442 DFELLPFGSGRRMCPGYNLGLKVMQLSLANLLHGFAWRLPEGMKEEE 488


>03_05_0985 - 29424698-29425183
          Length = 161

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 141 EDIDEGRVNPRDDFKTRARYLTEKY 215
           ED D G ++PR D K   R+L  KY
Sbjct: 8   EDEDLGIIDPRSDDKALKRHLLRKY 32


>03_01_0179 -
           1443508-1443624,1443712-1443773,1444904-1444971,
           1445811-1445868,1446439-1446629,1447164-1447359,
           1448396-1448609
          Length = 301

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +1

Query: 22  LSCRTVRP*LRNRTSSVSQSRPTSTTVYS*RLSPCLMVCQRTLMRVA*IPAMTSRLAL-G 198
           + CRT       +  S S+SRP  TT +      C   C    ++++ I      + L  
Sbjct: 200 VECRTSHLHCNTQDGSTSRSRPGRTTKH----PGCFQACPLNYLQISVITTDPKNILLRH 255

Query: 199 ILQKSTNTMLPKPVRFGALPRGYRPQHPG 285
             QKS   + PK     A P    PQ+ G
Sbjct: 256 FYQKSEEKLRPK----RAAPDNLTPQNNG 280


>02_05_0921 +
           32739495-32739696,32739815-32740002,32740132-32740330,
           32740426-32740604,32740760-32740910,32741165-32741298,
           32741436-32741615
          Length = 410

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 384 ICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFC 539
           I   L F +    +     ++ G ++ P     LY+ +L+A  V  +LYI+C
Sbjct: 192 IMATLGFQVLIQAIEQLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYC 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,925
Number of Sequences: 37544
Number of extensions: 358142
Number of successful extensions: 1096
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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