Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0476.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 157 4e-39
04_01_0103 + 1082077-1082167,1083037-1085477 152 2e-37
02_04_0017 + 18937774-18937864,18938505-18940945 152 2e-37
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 128 4e-30
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 103 7e-23
09_04_0276 - 16306894-16307526,16307556-16308572 30 1.4
04_01_0330 - 4369326-4370852 30 1.4
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 29 3.2
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 29 3.2
04_01_0119 + 1235573-1235680,1236205-1236296,1237263-1237360,123... 28 4.3
11_06_0282 - 21884702-21885085 27 7.5
10_05_0024 + 8203010-8203948,8204042-8204683 27 7.5
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 27 7.5
09_04_0278 + 16333261-16334172,16334900-16335532 27 9.9
08_02_0897 - 22362136-22363698 27 9.9
03_05_0985 - 29424698-29425183 27 9.9
03_01_0179 - 1443508-1443624,1443712-1443773,1444904-1444971,144... 27 9.9
02_05_0921 + 32739495-32739696,32739815-32740002,32740132-327403... 27 9.9
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 157 bits (382), Expect = 4e-39
Identities = 89/187 (47%), Positives = 113/187 (60%), Gaps = 6/187 (3%)
Frame = +3
Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
I S PVVS+RETV E+S + +SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K
Sbjct: 551 ITVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPK 610
Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPK--EFSTSMK---LRTLLXLDSS 350
R++ L+E++ +D A+KIWCF P P K ++ +K +
Sbjct: 611 VRSKILSEEFGWDKDLAKKIWCFGPETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKE 670
Query: 351 GPLRKELWLKR-ICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSL 527
G L +E R IC F + DV LH+DAIHRGGGQIIPT RR +YA LTA P
Sbjct: 671 GALAEENMRGRGIC----FEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKPRLLEP 726
Query: 528 YIFCEIQ 548
EIQ
Sbjct: 727 VYLVEIQ 733
Score = 85.8 bits (203), Expect = 2e-17
Identities = 47/96 (48%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Frame = +2
Query: 257 PEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL*CNTPY*C 436
PE TGPNI+VD KGVQYLNEIKDSVV GFQWA+KEG +AEEN+RG I C+
Sbjct: 635 PETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVILHS 694
Query: 437 HP*RWWPNH--SNN*KMLVRMSANCSPRLMEPVYLL 538
+++ PRL+EPVYL+
Sbjct: 695 DAIHRGGGQIIPTARRVIYAAQLTAKPRLLEPVYLV 730
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 152 bits (369), Expect = 2e-37
Identities = 78/181 (43%), Positives = 107/181 (59%)
Frame = +3
Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
I S PVVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K
Sbjct: 555 IIVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 614
Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365
R++ L+E++ +D A+KIWCF P P K +++ + ++
Sbjct: 615 VRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674
Query: 366 ELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCEI 545
+ + F + DV LH DAIHRGGGQ+IPT RR +YA LTA P EI
Sbjct: 675 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 734
Query: 546 Q 548
Q
Sbjct: 735 Q 735
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 152 bits (369), Expect = 2e-37
Identities = 78/181 (43%), Positives = 107/181 (59%)
Frame = +3
Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
I S PVVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K
Sbjct: 555 IIVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK 614
Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365
R++ L+E++ +D A+KIWCF P P K +++ + ++
Sbjct: 615 VRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674
Query: 366 ELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCEI 545
+ + F + DV LH DAIHRGGGQ+IPT RR +YA LTA P EI
Sbjct: 675 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEI 734
Query: 546 Q 548
Q
Sbjct: 735 Q 735
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 128 bits (308), Expect = 4e-30
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Frame = +3
Query: 21 PVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP-DGLPED-------IDEGRVNPRD 176
P+++YRETV + S + +SKSPNKHNRL+M+A+P+ + L +D ID+ R+ P+D
Sbjct: 562 PIITYRETVTKNSCRTVMSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKD 621
Query: 177 DFKTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGP 356
D K R + L+E++ +D A+KIW F P P K +++ +
Sbjct: 622 DIKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWA 681
Query: 357 LRKELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 512
++ + + F + DVTLH+D+IHRGGGQ+IPT RR +YA LTA P
Sbjct: 682 SKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASP 733
Score = 82.2 bits (194), Expect = 2e-16
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +2
Query: 257 PEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQ 406
PE GPN+LVD KGVQYL+EIKDSVV GFQWA+KEG +AEEN+RGV +
Sbjct: 649 PETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKEGALAEENMRGVCFE 698
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 103 bits (248), Expect = 7e-23
Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Frame = +3
Query: 15 SDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRA 194
+DPVV++ ETV + S C +++PNK N++ M A+P+ GL EDI+ G V+ K
Sbjct: 680 ADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEIT 739
Query: 195 RYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRKELW 374
+ ++Y++DV AR IW F P P + S + + LL ++ W
Sbjct: 740 DFFRQRYQWDVLAARSIWAFGPEKQGPNI--LLDDTLSVEVD-KNLLNAVKDSIVQGFQW 796
Query: 375 LKR---ICVV----LXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYI 533
R +C + F I + + + +HRGGGQIIPT RR +Y+ L A+P
Sbjct: 797 GAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPRLMEPVY 856
Query: 534 FCEIQ 548
+ EIQ
Sbjct: 857 YIEIQ 861
Score = 57.2 bits (132), Expect = 8e-09
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 257 PEGTGPNILVDCSKGVQY----LNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL*CN- 421
PE GPNIL+D + V+ LN +KDS+V GFQW A+EG + +E +R V + L N
Sbjct: 761 PEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANI 820
Query: 422 TPY*CHP*RWWPNHSNN*KMLVRMS-ANCSPRLMEPVYLL 538
P H R + +V + +PRLMEPVY +
Sbjct: 821 APEPLH--RGGGQIIPTARRVVYSAFLMANPRLMEPVYYI 858
>09_04_0276 - 16306894-16307526,16307556-16308572
Length = 549
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
D L P G+G + S G++ + S++ GF+W +GV A E
Sbjct: 470 DFQLLPFGSGRRLCPGHSLGLKVIQLSLASLLHGFEWRLPDGVSAGE 516
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 469 VGMIWPPPLWMASVWSVTS 413
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 54 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPE 143
E + LCL PN+H + + A+ +P LPE
Sbjct: 42 EKENLCLYGFPNEHWEVNLPAEEVPPELPE 71
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 264 VPAPTSWWIAPKEFSTSMKLRTLLXLDSSG 353
VP+P WW P S + RT L S+G
Sbjct: 589 VPSPMPWWCRPSSVSRDGEARTELNPSSAG 618
>04_01_0119 +
1235573-1235680,1236205-1236296,1237263-1237360,
1237470-1237625,1238618-1238637
Length = 157
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 286 HQDVGAGTLGAKHQILRASVTSYSYFSVRYRARVLKS 176
H D+ A LG+K L + V SY Y + AR+ K+
Sbjct: 57 HHDMLASVLGSKEAALESIVYSYRYSFSGFAARLTKA 93
>11_06_0282 - 21884702-21885085
Length = 127
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 144 DIDEGRVNPRDDFKTRARYLTEKYEYDVTEARK 242
++D G V+P DDF ++ Y+ + D+ RK
Sbjct: 43 EVDAGVVDPDDDFYYKSLYVLHESSKDLRHVRK 75
>10_05_0024 + 8203010-8203948,8204042-8204683
Length = 526
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
D L P G G I S G++ + + ++V GF W G ++
Sbjct: 448 DFGLIPFGAGRRICAGLSWGLRMVTLMTATLVHGFDWTLANGATPDK 494
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 427 WSVTS*MLNXNTTQILFSHNSFLSGPLESXHNRVLNFIEVLNSFGAIHQ 281
WS+ + + I+ S+N L G LES H+R L+ V A+H+
Sbjct: 641 WSLYAINIAHRRVDIMDSNNYNLIGTLESDHHRALSKRIVKRLSDALHE 689
>09_04_0278 + 16333261-16334172,16334900-16335532
Length = 514
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
D L P G+G + S G++ + +++ GF W +GV E+
Sbjct: 435 DFELLPFGSGRRMCPGYSLGLKVIQLSLANLLHGFAWRLPDGVTREQ 481
>08_02_0897 - 22362136-22363698
Length = 520
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 242 DLVLCPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEE 382
D L P G+G + + G++ + +++ GF W EG+ EE
Sbjct: 442 DFELLPFGSGRRMCPGYNLGLKVMQLSLANLLHGFAWRLPEGMKEEE 488
>03_05_0985 - 29424698-29425183
Length = 161
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 141 EDIDEGRVNPRDDFKTRARYLTEKY 215
ED D G ++PR D K R+L KY
Sbjct: 8 EDEDLGIIDPRSDDKALKRHLLRKY 32
>03_01_0179 -
1443508-1443624,1443712-1443773,1444904-1444971,
1445811-1445868,1446439-1446629,1447164-1447359,
1448396-1448609
Length = 301
Score = 27.1 bits (57), Expect = 9.9
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +1
Query: 22 LSCRTVRP*LRNRTSSVSQSRPTSTTVYS*RLSPCLMVCQRTLMRVA*IPAMTSRLAL-G 198
+ CRT + S S+SRP TT + C C ++++ I + L
Sbjct: 200 VECRTSHLHCNTQDGSTSRSRPGRTTKH----PGCFQACPLNYLQISVITTDPKNILLRH 255
Query: 199 ILQKSTNTMLPKPVRFGALPRGYRPQHPG 285
QKS + PK A P PQ+ G
Sbjct: 256 FYQKSEEKLRPK----RAAPDNLTPQNNG 280
>02_05_0921 +
32739495-32739696,32739815-32740002,32740132-32740330,
32740426-32740604,32740760-32740910,32741165-32741298,
32741436-32741615
Length = 410
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 384 ICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFC 539
I L F + + ++ G ++ P LY+ +L+A V +LYI+C
Sbjct: 192 IMATLGFQVLIQAIEQLVENKAGEKMTPEQLIWLYSIMLSATVVKLALYIYC 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,925
Number of Sequences: 37544
Number of extensions: 358142
Number of successful extensions: 1096
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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