Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0476.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   186   1e-47
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   8e-24
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           32   0.27 
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    29   2.5  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                29   2.5  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   29   3.3  
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)                    28   5.8  
SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   5.8  
SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  186 bits (452), Expect = 1e-47
 Identities = 94/183 (51%), Positives = 116/183 (63%), Gaps = 1/183 (0%)
 Frame = +3

Query: 3    PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEG-RVNPRDD 179
            P+ KS+PVVSYRE V+++S+Q+CLSKSPNKHNRLFM A P+ + LPEDID+G  +NPR D
Sbjct: 543  PLKKSEPVVSYRECVSDKSNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQD 602

Query: 180  FKTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPL 359
            FK RARYL + Y +DV EARKIW F P    P       K      +++  +        
Sbjct: 603  FKIRARYLADTYGWDVNEARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWAT 662

Query: 360  RKELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFC 539
            ++          + FNI+DVTLH DAIHRGGGQIIPT RR LYAC+LTA P         
Sbjct: 663  KEGPLCDENVRGVRFNIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSV 722

Query: 540  EIQ 548
            EIQ
Sbjct: 723  EIQ 725



 Score = 87.0 bits (206), Expect = 9e-18
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = +2

Query: 257 PEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAKEGVMAEENLRGV 397
           PEGTGPN+LVD SKGVQYLNEIKDSVV GFQWA KEG + +EN+RGV
Sbjct: 629 PEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGV 675


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  107 bits (256), Expect = 8e-24
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 7/188 (3%)
 Frame = +3

Query: 6    IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
            I  +DPV+++ ETV E S   C +++PNK N++ M A+P+  GL EDI+  +V    + K
Sbjct: 521  IKVADPVIAFCETVVETSSLKCFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKK 580

Query: 186  TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365
                +   KY++D+  AR IW F P    P    I   +   S   ++LL       ++ 
Sbjct: 581  KLGEFFQTKYDWDLLAARSIWAFGPENTGPN---ILVDDTLPSEVDKSLLNTVKDSIIQG 637

Query: 366  ELWLKR---ICVV----LXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWS 524
              W  R   +C      + F I D  +  + IHRGGGQIIPT RR  Y+  L A P    
Sbjct: 638  FQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLME 697

Query: 525  LYIFCEIQ 548
             Y F E+Q
Sbjct: 698  PYFFVEVQ 705


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 6   IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP--EDIDEGRVNPRDD 179
           I K+     Y+E + +E++ L   +  N+H+ +   AQ  P GL     I+E + N R  
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMV 275

Query: 180 FK 185
           FK
Sbjct: 276 FK 277


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = -3

Query: 300 PLEQSTRMLGPVPSGQSTKSYGLR*HRIRTFL*DTERES*SHRGDSRDPHQCPLADHQAW 121
           P E+ TR  GP    ++T +Y    HR       ++  S  H G       C + D  +W
Sbjct: 343 PGERDTRSHGPT---RTTWAYASPCHRNALMTSRSQGNSMLHAGMCAYRDSCDMNDWTSW 399

Query: 120 AEPS*IDGCACWATLRDRAGPIPQLR 43
           +E    +GC   A +R    P+  ++
Sbjct: 400 SEDVTSEGCKVQARIRTYVSPLKHMQ 425


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 33  YRETVAEESDQLCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 176
           Y+         + L K  N H+   LF K + +P  L ED++EG V   D
Sbjct: 230 YKSISTRRELYMLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 54  ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTR 191
           E D+ CL + P +     M         P+  D GR  PRDD K +
Sbjct: 51  EGDEPCLMEKPREPRNNDMNTTHYGGKTPDPRDGGRDGPRDDEKQK 96


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 84  PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 176
           PN  N  F+KA P+ DG   D + G +  RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443


>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 325 LNFIEVLNSFGAIHQDVGAGTLGAKHQILRASV 227
           LN +E  N FG + Q+ G     +KH+ L+  V
Sbjct: 329 LNMLEARNDFGVVEQNDGCQQNRSKHEFLQVYV 361


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 514 TG*AVSRHAYKHLLVVGMIWPPPLWMA 434
           T  A+ +H   HL  +  +WP   WMA
Sbjct: 10  TNIALRKHQCSHLFTIKRVWPVTRWMA 36


>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1292

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
 Frame = +3

Query: 201 LTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRKEL--W 374
           L E Y +   E  ++ CFA R+        APK  + S         ++    +KE   W
Sbjct: 121 LAEAYTFKQKEGEEVACFASRLDNHVRLAYAPKRVARSNVTVKAEPQEARESTKKEKTEW 180

Query: 375 LKRICVVLXFNIYDVTLHTDAIHRGGG 455
           +  IC      +  V   T  + RG G
Sbjct: 181 IAEICAAFSREVRGVLKET--LERGPG 205


>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
          Length = 232

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 27  VSYRETVAEESDQLCLS-KSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 176
           V +R  +   +D   L+ +  N H+   LF K + +P  L ED++EG V   D
Sbjct: 29  VKFRYVILNINDFAFLNNRRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 81


>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 202 LQKSTNTMLPKPVRFGALPRGYRPQHPGGLLQRSSVPQ*N*GLCCXWI 345
           L + T T + +PVR+G  P GY P   G    R        G+   W+
Sbjct: 628 LARYTATWVRRPVRYGITPSGY-PSELGNATSRVWYNDSKQGITATWV 674


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
 Frame = +3

Query: 120 PMPDGLPEDIDEGR----VNPR 173
           P+PDG+ E+IDEG+    +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742


>SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 345 SSGPLRKELWLKRICVVLXFNIYDV 419
           S  P+RK +WL  +CV   + IY +
Sbjct: 27  SKHPIRKTVWLVLLCVCFGYVIYQI 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,704
Number of Sequences: 59808
Number of extensions: 388339
Number of successful extensions: 931
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)