Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0476.Seq
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15805-1|CAA33804.1|  844|Drosophila melanogaster protein ( Dros...   225   4e-59
AY075481-1|AAL68292.1|  844|Drosophila melanogaster RE38659p pro...   224   7e-59
AE014134-3534|AAN11135.1|  832|Drosophila melanogaster CG2238-PC...   224   7e-59
AE014134-3533|AAG22125.2|  832|Drosophila melanogaster CG2238-PB...   224   7e-59
AE014134-3532|AAF57226.2|  844|Drosophila melanogaster CG2238-PA...   224   7e-59
AY089551-1|AAL90289.1|  975|Drosophila melanogaster LD28793p pro...   105   3e-23
AE014297-4212|AAF56769.1|  975|Drosophila melanogaster CG4849-PA...   105   3e-23
AY113337-1|AAM29342.1| 1190|Drosophila melanogaster AT31843p pro...    28   7.2  
AE014296-3639|AAF51795.2| 1536|Drosophila melanogaster CG14562-P...    28   7.2  
BT021354-1|AAX33502.1|  563|Drosophila melanogaster LP16040p pro...    28   9.6  
BT001356-1|AAN71111.1|  563|Drosophila melanogaster AT27831p pro...    28   9.6  
AE014297-222|AAN13275.1|  563|Drosophila melanogaster CG31538-PA...    28   9.6  

>X15805-1|CAA33804.1|  844|Drosophila melanogaster protein (
            Drosophila DMEF2 genefor the translation elongation
            factor 2. ).
          Length = 844

 Score =  225 bits (549), Expect = 4e-59
 Identities = 108/182 (59%), Positives = 125/182 (68%)
 Frame = +3

Query: 3    PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDF 182
            P+ KSDPVVSYRETV+EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+F
Sbjct: 555  PLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGEVSAKDEF 614

Query: 183  KTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLR 362
            K RARYL+EKY+YDVTEARKIWCF P    P       K      +++  +        +
Sbjct: 615  KARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASK 674

Query: 363  KELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCE 542
            + +        + FNIYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P        CE
Sbjct: 675  EGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCE 734

Query: 543  IQ 548
            IQ
Sbjct: 735  IQ 736


>AY075481-1|AAL68292.1|  844|Drosophila melanogaster RE38659p protein.
          Length = 844

 Score =  224 bits (547), Expect = 7e-59
 Identities = 108/182 (59%), Positives = 125/182 (68%)
 Frame = +3

Query: 3    PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDF 182
            P+ KSDPVVSYRETV+EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+F
Sbjct: 555  PLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEF 614

Query: 183  KTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLR 362
            K RARYL+EKY+YDVTEARKIWCF P    P       K      +++  +        +
Sbjct: 615  KARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASK 674

Query: 363  KELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCE 542
            + +        + FNIYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P        CE
Sbjct: 675  EGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCE 734

Query: 543  IQ 548
            IQ
Sbjct: 735  IQ 736


>AE014134-3534|AAN11135.1|  832|Drosophila melanogaster CG2238-PC,
            isoform C protein.
          Length = 832

 Score =  224 bits (547), Expect = 7e-59
 Identities = 108/182 (59%), Positives = 125/182 (68%)
 Frame = +3

Query: 3    PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDF 182
            P+ KSDPVVSYRETV+EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+F
Sbjct: 543  PLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEF 602

Query: 183  KTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLR 362
            K RARYL+EKY+YDVTEARKIWCF P    P       K      +++  +        +
Sbjct: 603  KARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASK 662

Query: 363  KELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCE 542
            + +        + FNIYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P        CE
Sbjct: 663  EGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCE 722

Query: 543  IQ 548
            IQ
Sbjct: 723  IQ 724


>AE014134-3533|AAG22125.2|  832|Drosophila melanogaster CG2238-PB,
            isoform B protein.
          Length = 832

 Score =  224 bits (547), Expect = 7e-59
 Identities = 108/182 (59%), Positives = 125/182 (68%)
 Frame = +3

Query: 3    PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDF 182
            P+ KSDPVVSYRETV+EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+F
Sbjct: 543  PLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEF 602

Query: 183  KTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLR 362
            K RARYL+EKY+YDVTEARKIWCF P    P       K      +++  +        +
Sbjct: 603  KARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASK 662

Query: 363  KELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCE 542
            + +        + FNIYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P        CE
Sbjct: 663  EGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCE 722

Query: 543  IQ 548
            IQ
Sbjct: 723  IQ 724


>AE014134-3532|AAF57226.2|  844|Drosophila melanogaster CG2238-PA,
            isoform A protein.
          Length = 844

 Score =  224 bits (547), Expect = 7e-59
 Identities = 108/182 (59%), Positives = 125/182 (68%)
 Frame = +3

Query: 3    PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDF 182
            P+ KSDPVVSYRETV+EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+F
Sbjct: 555  PLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEF 614

Query: 183  KTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLR 362
            K RARYL+EKY+YDVTEARKIWCF P    P       K      +++  +        +
Sbjct: 615  KARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASK 674

Query: 363  KELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCE 542
            + +        + FNIYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P        CE
Sbjct: 675  EGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCE 734

Query: 543  IQ 548
            IQ
Sbjct: 735  IQ 736


>AY089551-1|AAL90289.1|  975|Drosophila melanogaster LD28793p protein.
          Length = 975

 Score =  105 bits (253), Expect = 3e-23
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 7/188 (3%)
 Frame = +3

Query: 6    IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
            I  +DPVV++ ETV E S   C +++PNK N++ M ++P+  GL EDI+ G V    + K
Sbjct: 656  IKVADPVVAFCETVVETSSLKCFAETPNKKNKITMISEPLEKGLAEDIENGTVCINWNKK 715

Query: 186  TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365
                +    Y++D+  AR IW F P    P    I   +   S   + LL       ++ 
Sbjct: 716  RIGEFFQVNYDWDLLAARSIWAFGPDSTGPN---ILVDDTLPSEVDKNLLTAVKDSIVQG 772

Query: 366  ELWLKR---ICVV----LXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWS 524
              W  R   +C      + F I D  +  +A+HRGGGQIIPT RR  Y+  L A P    
Sbjct: 773  FQWGTREGPLCEEPIRNVKFKILDGVIANEALHRGGGQIIPTARRVAYSAFLMATPRLME 832

Query: 525  LYIFCEIQ 548
             Y+F E+Q
Sbjct: 833  PYLFVEVQ 840



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +2

Query: 257 PEGTGPNILVDCSKGVQY----LNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL 412
           P+ TGPNILVD +   +     L  +KDS+V GFQW  +EG + EE +R V  + L
Sbjct: 740 PDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRNVKFKIL 795


>AE014297-4212|AAF56769.1|  975|Drosophila melanogaster CG4849-PA
            protein.
          Length = 975

 Score =  105 bits (253), Expect = 3e-23
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 7/188 (3%)
 Frame = +3

Query: 6    IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
            I  +DPVV++ ETV E S   C +++PNK N++ M ++P+  GL EDI+ G V    + K
Sbjct: 656  IKVADPVVAFCETVVETSSLKCFAETPNKKNKITMISEPLEKGLAEDIENGTVCINWNKK 715

Query: 186  TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLRK 365
                +    Y++D+  AR IW F P    P    I   +   S   + LL       ++ 
Sbjct: 716  RIGEFFQVNYDWDLLAARSIWAFGPDSTGPN---ILVDDTLPSEVDKNLLTAVKDSIVQG 772

Query: 366  ELWLKR---ICVV----LXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWS 524
              W  R   +C      + F I D  +  +A+HRGGGQIIPT RR  Y+  L A P    
Sbjct: 773  FQWGTREGPLCEEPIRNVKFKILDGVIANEALHRGGGQIIPTARRVAYSAFLMATPRLME 832

Query: 525  LYIFCEIQ 548
             Y+F E+Q
Sbjct: 833  PYLFVEVQ 840



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +2

Query: 257 PEGTGPNILVDCSKGVQY----LNEIKDSVVXGFQWAAKEGVMAEENLRGVXIQHL 412
           P+ TGPNILVD +   +     L  +KDS+V GFQW  +EG + EE +R V  + L
Sbjct: 740 PDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRNVKFKIL 795


>AY113337-1|AAM29342.1| 1190|Drosophila melanogaster AT31843p
           protein.
          Length = 1190

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 18  DPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP 140
           D  V Y+    +++D   LS    K  R+  K++P P G P
Sbjct: 608 DSTVIYQRRNQQQADSQALSLRARKSRRMAAKSKPAPVGTP 648


>AE014296-3639|AAF51795.2| 1536|Drosophila melanogaster CG14562-PA
            protein.
          Length = 1536

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 18   DPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP 140
            D  V Y+    +++D   LS    K  R+  K++P P G P
Sbjct: 954  DSTVIYQRRNQQQADSQALSLRARKSRRMAAKSKPAPVGTP 994


>BT021354-1|AAX33502.1|  563|Drosophila melanogaster LP16040p
           protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 222 DVTEARKIWCFAPRVPAPTSWWIAPK 299
           D+T AR +W      P P SW+  PK
Sbjct: 326 DITVARGLWKNEEDTPEPDSWYEQPK 351


>BT001356-1|AAN71111.1|  563|Drosophila melanogaster AT27831p
           protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 222 DVTEARKIWCFAPRVPAPTSWWIAPK 299
           D+T AR +W      P P SW+  PK
Sbjct: 326 DITVARGLWKNEEDTPEPDSWYEQPK 351


>AE014297-222|AAN13275.1|  563|Drosophila melanogaster CG31538-PA
           protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 222 DVTEARKIWCFAPRVPAPTSWWIAPK 299
           D+T AR +W      P P SW+  PK
Sbjct: 326 DITVARGLWKNEEDTPEPDSWYEQPK 351


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,315,295
Number of Sequences: 53049
Number of extensions: 575581
Number of successful extensions: 1690
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)