Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0476.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 198 3e-51
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 192 1e-49
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 98 3e-21
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 94 5e-20
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 28 5.1
U64836-6|AAG24056.2| 201|Caenorhabditis elegans Hypothetical pr... 27 6.7
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 27 8.9
U40415-6|AAP68933.1| 329|Caenorhabditis elegans Homolog of yeas... 27 8.9
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 27 8.9
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 27 8.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 198 bits (482), Expect = 3e-51
Identities = 99/182 (54%), Positives = 116/182 (63%)
Frame = +3
Query: 3 PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDF 182
P+ KSDPVVSYRETV ES+Q+CLSKSPNKHNRL AQPMPDGL +DI+ G VN RD+F
Sbjct: 563 PLKKSDPVVSYRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEF 622
Query: 183 KTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLR 362
K RA+ L EKYEYDVTEARKIWCF P P K +++ + R
Sbjct: 623 KARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATR 682
Query: 363 KELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCE 542
+ + + FN++DVTLH DAIHRGGGQIIPT RR YA +LTA P E
Sbjct: 683 EGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVE 742
Query: 543 IQ 548
IQ
Sbjct: 743 IQ 744
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 192 bits (468), Expect = 1e-49
Identities = 97/182 (53%), Positives = 115/182 (63%)
Frame = +3
Query: 3 PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDF 182
P+ KSDPVVSYRETV ES+Q+CLSKSPNKHNRL AQPMPDGL +DI+ G V+ RD+F
Sbjct: 563 PLKKSDPVVSYRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEF 622
Query: 183 KTRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWWIAPKEFSTSMKLRTLLXLDSSGPLR 362
K RA+Y EKYEY VTEARKIWCF P P K +++ + R
Sbjct: 623 KARAKYPGEKYEYAVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATR 682
Query: 363 KELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFCE 542
+ + + FN++DVTLH DAIHRGGGQIIPT RR YA +LTA P E
Sbjct: 683 EGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVE 742
Query: 543 IQ 548
IQ
Sbjct: 743 IQ 744
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 98.3 bits (234), Expect = 3e-21
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 4/184 (2%)
Frame = +3
Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
I +DPVV++ ETV E S C +++PNK N++ M A+P+ L EDI+ V + +
Sbjct: 657 IKVADPVVTFNETVIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRR 716
Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWW--IAPKEFSTSM--KLRTLLXLDSSG 353
+ KY +D+ AR IW F P P P E + +R L
Sbjct: 717 RLGEFFQTKYNWDLLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQW 776
Query: 354 PLRKELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYI 533
R+ + + F + D + T+ ++RGGGQ+IPT RRC Y+ L A P Y
Sbjct: 777 ATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYY 836
Query: 534 FCEI 545
E+
Sbjct: 837 TVEV 840
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 94.3 bits (224), Expect = 5e-20
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Frame = +3
Query: 6 IXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 185
I +DPVV++ ETV E S C +++PNK N++ M A+P+ L EDI+ V + +
Sbjct: 532 IKVADPVVTFNETVIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRR 591
Query: 186 TRARYLTEKYEYDVTEARKIWCFAPRVPAPTSWW--IAPKEFSTSM--KLRTLLXLDSSG 353
+ KY +D+ AR IW F P P E + +R L
Sbjct: 592 RLGEFFQTKYNWDLLAARSIWAFGLDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQW 651
Query: 354 PLRKELWLKRICVVLXFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYI 533
R+ + + F + D + T+ ++RGGGQ+IPT RRC Y+ L A P Y
Sbjct: 652 ATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYY 711
Query: 534 FCEI 545
E+
Sbjct: 712 TVEV 715
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +3
Query: 108 MKAQPMPDGLPEDIDEGRVNP---RDDFKTRARYLTEKYEYDVTEARKI 245
++ P P PE R NP RDD + ++ E+ VTE R I
Sbjct: 87 IQIHPAPIAGPESTSSFRTNPEENRDDEEDNVEETDQEIEFPVTEERSI 135
>U64836-6|AAG24056.2| 201|Caenorhabditis elegans Hypothetical
protein F10G2.1 protein.
Length = 201
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 69 CLSKSPNKHNRLFMKAQPMPDGLPEDIDE 155
C K NK++ + P PD + E+ DE
Sbjct: 116 CSEKLENKNSTCYQNWDPFPDAIDEETDE 144
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 3 PIXKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPD 131
P S+ V + R+T E+ Q ++K+P+ N ++ P+P+
Sbjct: 1626 PGPTSEHVATIRKTPVRETHQSSITKAPSLENVAKIRQSPVPE 1668
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 254 CPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAK-----EGVMAEENLRGV 397
CPEG+ L C++ Q+L E +S W + GV++ E++ G+
Sbjct: 205 CPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVSGL 257
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 254 CPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAK-----EGVMAEENLRGV 397
CPEG+ L C++ Q+L E +S W + GV++ E++ G+
Sbjct: 207 CPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVSGL 259
>U40415-6|AAP68933.1| 329|Caenorhabditis elegans Homolog of yeast
longevity geneprotein 2 protein.
Length = 329
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 201 LTEKYEYDVTEARKIWCFAPRVPAPTSWW 287
L E + YD+TE + W F P +P +W+
Sbjct: 110 LHESHLYDITECWRNWPFHP-IPNAVAWY 137
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 254 CPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAK-----EGVMAEENLRGV 397
CPEG+ L C++ Q+L E +S W + GV++ E++ G+
Sbjct: 205 CPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVSGL 257
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 254 CPEGTGPNILVDCSKGVQYLNEIKDSVVXGFQWAAK-----EGVMAEENLRGV 397
CPEG+ L C++ Q+L E +S W + GV++ E++ G+
Sbjct: 207 CPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVSGL 259
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,063,635
Number of Sequences: 27780
Number of extensions: 280478
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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