Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0476.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 207  EKYEYDVTEARKIWCFAPRVPAP-TSWWIAPKEFSTSMKLRTL 332
            +K+     E  K+ C A  VPAP  +W +      +S +LR L
Sbjct: 1284 DKFTATYKEDVKLPCLAVGVPAPEVTWKVRGAVLQSSDRLRQL 1326


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 490 AYKHLLVVGMIWPPPLWMASVWSVTS*MLNXNTTQILF-SHNSFLSGPLESXHNRVLNFI 314
           A  H+L +G    PP  +  +W     M++  T   LF  H + L   L+S   +    +
Sbjct: 333 AMSHMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYREKV 392

Query: 313 EVLNSFGA 290
           + +  + A
Sbjct: 393 KQVEEYMA 400


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 490 AYKHLLVVGMIWPPPLWMASVWSVTS*MLNXNTTQILF-SHNSFLSGPLESXHNRVLNFI 314
           A  H+L +G    PP  +  +W     M++  T   LF  H + L   L+S   +    +
Sbjct: 301 AMSHMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYREKV 360

Query: 313 EVLNSFGA 290
           + +  + A
Sbjct: 361 KQVEEYMA 368


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 87  NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 221
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 87  NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 221
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 QPMPDGLPEDIDEGRVNPR 173
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 73  SQSRPTSTTVYS*RLSPCLMVCQRT 147
           +Q+ P +TT     + PC  +C+ T
Sbjct: 218 AQNGPFNTTTIFVPVKPCPWICELT 242


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 421  HSILMPSIEVVAKSFQQLEDACTHVC*LLTP 513
            HS+L  +  VVA S   + +  T++  +L P
Sbjct: 939  HSVLHSAQSVVASSASNVTNVTTNLTTILPP 969


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 QPMPDGLPEDIDEGRVNPR 173
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,864
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)