Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0475.Seq
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    31   0.23 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.8  
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    27   3.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.7  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.5  
SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc...    25   8.5  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   8.5  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 554 DASQPSCRKRRNRNPNSSFEIRNPDPLRRTEPTFNVEGLK--RPEPYKSGLKVKGATTPK 727
           +++ P  RK R R P     +R P     T+P+F+V G+      P  S +K KG  T K
Sbjct: 537 ESALPDARKSRARGP-----VRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVETRK 591

Query: 728 D 730
           +
Sbjct: 592 E 592


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 17  QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALEKREMS 130
           +++G  ++ IQI +  YH+A   SCE   V G  E  E S
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGS 558


>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 593 NPN-SSFEIRNPDPLRRTEPTFNVEGLKRPEPYK-SGLKVKG 712
           NP  +S  +R  D  + T+    +   K+PEPYK  G+ V G
Sbjct: 160 NPTPTSLVLRGIDRQKVTQFAAKIRSFKKPEPYKGKGIYVDG 201


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 421 SEQFELHGVCFPNRWVAGPSPNVACTSNPIDNLGIP 314
           S+Q        P+  +  PSP+++ T  P  N+G P
Sbjct: 548 SQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPP 583


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 269 TTLHGRIGWSP 237
           TTLHGR+ W P
Sbjct: 156 TTLHGRLAWKP 166


>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 184 GRHQMRSADMSARRILLPGDQPMRPCNVVCNKTHHNYDSGLCVKECQGYLLDL 342
           GR    SA+    R+ LPGDQ + P       +  + +    ++  QG+++ +
Sbjct: 129 GRQLAASANDLEARVYLPGDQHVHPWGHTAQYSMPSGEPCFALELAQGWIVSM 181


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 566 PSCRKRRNRNPNSSFEIRNPDPLRRTEP---TFNVEGLKRPEPYKS 694
           P   KR++R   +S E+++  PL+  E    T  ++GL+    YK+
Sbjct: 468 PDMLKRKDRGKLASIEMKDRTPLKYGEELNVTHGIQGLELLAQYKA 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,866
Number of Sequences: 5004
Number of extensions: 56742
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)