Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0475.Seq
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0056 + 14127721-14128021,14128122-14128343,14129213-141293...    31   0.95 
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    31   1.3  
08_01_0191 + 1590948-1591607,1591694-1592176,1592449-1592451,159...    30   2.2  
02_05_0930 - 32801737-32801936,32802038-32802107                       29   3.9  
08_02_0933 + 22740123-22740364,22741952-22742390,22743060-227431...    29   5.1  
03_02_0285 - 7096088-7096506,7096817-7096982,7097114-7097296,709...    28   6.7  
08_02_1271 - 25762750-25764276                                         28   8.9  
02_01_0189 - 1273313-1274157,1274595-1275549                           28   8.9  

>03_03_0056 +
           14127721-14128021,14128122-14128343,14129213-14129364,
           14129449-14129719,14130621-14130853
          Length = 392

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = +1

Query: 208 DMSARRILLPGDQPM----RPCNVVCNKTHHNYDSGLCVK 315
           D+ A+ IL+PG  PM    R  N++ +K H++YD   C+K
Sbjct: 229 DLGAKTILVPGIPPMGCIPRFLNLLPSKNHNDYDKLGCLK 268


>03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,
            6617328-6617469,6617567-6617938,6618056-6618187,
            6618907-6619035,6619125-6621188
          Length = 1176

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 596  PNSSFEIRNPDPLRRTEPTFNVEGLKRPEPYKSGL 700
            P  +F    P+P+R+T P+F V  +    PY++GL
Sbjct: 1035 PAPAFSYAPPEPIRKTTPSFRV--MHTSPPYRNGL 1067


>08_01_0191 +
           1590948-1591607,1591694-1592176,1592449-1592451,
           1592555-1592992
          Length = 527

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 61  IIPQCLCLFLRKCTRCFREERDVGIRVCPDARWRRLRSNHPGR 189
           +IP CLC+ L +      ++++ G R   D   RR+R+  P R
Sbjct: 6   LIPLCLCILLLRGASAVSDQQEAGRRDSCDRIDRRIRALEPTR 48


>02_05_0930 - 32801737-32801936,32802038-32802107
          Length = 89

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 250 MRPCNVVCNKTHHNYDSGLCVKECQ 324
           +  C  V N+ +   DSGLCV  CQ
Sbjct: 30  LETCTEVINREYPTCDSGLCVANCQ 54


>08_02_0933 +
           22740123-22740364,22741952-22742390,22743060-22743172,
           22743470-22743575
          Length = 299

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 567 GCDASSH*GTASRGSWLAGTLL*ISPRDSSSAYYDEN*DQYCQSHTADDQSSL 409
           GC+   H G    G W A  +L ++ +  S  +  E  D  C      +Q++L
Sbjct: 101 GCEVGLHEGEEELGMWTAPKMLEVADQALSGPHCQELPDHTCPRFAPSNQATL 153


>03_02_0285 -
           7096088-7096506,7096817-7096982,7097114-7097296,
           7097529-7097768
          Length = 335

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 134 FVC-VLMLAGVASAQITLDGIRCGQLICQLDEYCSPETNRCVRAMLSAIKHTITTIAAFA 310
           F+C +++L G+A+A  +      GQL     +YC P+  R VR+ ++A       + A  
Sbjct: 16  FLCNIVVLLGLAAAAAS------GQLTDDYYDYCCPQVYRIVRSRVAAAMKAEMRMGASL 69

Query: 311 LR 316
           LR
Sbjct: 70  LR 71


>08_02_1271 - 25762750-25764276
          Length = 508

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 143 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPE 241
           VL +AG     +  +G    G  +C  DE+CSPE
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPE 480


>02_01_0189 - 1273313-1274157,1274595-1275549
          Length = 599

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 143 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPE 241
           VL +AG     +  DG    G  +C  D +CSPE
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPE 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,087,030
Number of Sequences: 37544
Number of extensions: 416571
Number of successful extensions: 1144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)