Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0475.Seq
         (738 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084146-1|AAL89884.1|  241|Drosophila melanogaster RE28509p pro...    41   0.002
AE014134-2937|AAF53671.1|  239|Drosophila melanogaster CG10176-P...    34   0.18 
AE014296-3291|AAF49057.1|  352|Drosophila melanogaster CG6996-PA...    29   5.0  
AE014296-2658|AAN11764.1|  351|Drosophila melanogaster CG13073-P...    29   5.0  
AY058777-1|AAL14006.1|  721|Drosophila melanogaster SD06355p pro...    29   6.6  
AE014134-872|AAX52655.1|  690|Drosophila melanogaster CG14039-PE...    29   6.6  
AE014134-871|AAX52654.1|  721|Drosophila melanogaster CG14039-PF...    29   6.6  
AE014134-870|AAF52216.2|  721|Drosophila melanogaster CG14039-PA...    29   6.6  

>AY084146-1|AAL89884.1|  241|Drosophila melanogaster RE28509p
           protein.
          Length = 241

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 PCNVVCNKTHHNYDSGLCVKECQGY 330
           PC  VCN   HNYD+ LC KEC  Y
Sbjct: 56  PCIEVCNNQTHNYDAFLCAKECSAY 80


>AE014134-2937|AAF53671.1|  239|Drosophila melanogaster CG10176-PA
           protein.
          Length = 239

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 256 PCNVVCNKTHHNYDSGLCVKE 318
           PC  VCN   HNYD+ LC KE
Sbjct: 56  PCIEVCNNQTHNYDAFLCAKE 76


>AE014296-3291|AAF49057.1|  352|Drosophila melanogaster CG6996-PA
           protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 158 GVASAQITLDGIRCGQLICQLDEYCSPETNRCVRAMLS 271
           G     I  DGI  GQ  C  DEY    T RC   ++S
Sbjct: 278 GCRGYSICQDGIVIGQGTCPQDEYFDEITQRCTTQVIS 315


>AE014296-2658|AAN11764.1|  351|Drosophila melanogaster CG13073-PB,
           isoform B protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 131 PTSLSSLKHRVHFRRNRHKH 72
           P S S L HR H+ R+RH+H
Sbjct: 165 PCSYSHLHHRRHWHRHRHRH 184


>AY058777-1|AAL14006.1|  721|Drosophila melanogaster SD06355p
           protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 140 TRIPTSLSSLKHRVHFRRNR 81
           T IP+SL +  H VH RRNR
Sbjct: 84  TAIPSSLETRSHPVHLRRNR 103


>AE014134-872|AAX52655.1|  690|Drosophila melanogaster CG14039-PE,
           isoform E protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 140 TRIPTSLSSLKHRVHFRRNR 81
           T IP+SL +  H VH RRNR
Sbjct: 84  TAIPSSLETRSHPVHLRRNR 103


>AE014134-871|AAX52654.1|  721|Drosophila melanogaster CG14039-PF,
           isoform F protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 140 TRIPTSLSSLKHRVHFRRNR 81
           T IP+SL +  H VH RRNR
Sbjct: 84  TAIPSSLETRSHPVHLRRNR 103


>AE014134-870|AAF52216.2|  721|Drosophila melanogaster CG14039-PA,
           isoform A protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 140 TRIPTSLSSLKHRVHFRRNR 81
           T IP+SL +  H VH RRNR
Sbjct: 84  TAIPSSLETRSHPVHLRRNR 103


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,311,384
Number of Sequences: 53049
Number of extensions: 709321
Number of successful extensions: 2046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)