Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0475.Seq
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical ...    29   4.5  

>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 209 ICQLDEYCSPETNRC 253
           IC LDEYC+ ETN C
Sbjct: 444 ICDLDEYCNGETNDC 458


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 209 ICQLDEYCSPETNRC 253
           IC LDEYC+ ETN C
Sbjct: 444 ICDLDEYCNGETNDC 458


>AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical
           protein F13A2.3 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 492 EIFKAKFQPAKNRVKQYPNDLTHHNPHAESAETETRTQASKYETR 626
           E    K +   N  K + N+ THH     S   E R QA+ Y+TR
Sbjct: 199 EAMPIKQKSEANGTKPH-NNTTHHRQFDSSRRREERHQAAPYQTR 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,505,378
Number of Sequences: 27780
Number of extensions: 342107
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)