Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0475.Seq
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein, p...    28   5.6  
At1g13650.2 68414.m01605 expressed protein                             28   5.6  
At1g13650.1 68414.m01604 expressed protein                             28   5.6  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    28   7.4  
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)          27   9.8  

>At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein,
           putative (DRT100) similar to
           DNA-damage-repair/toleration protein DRT100 [Precursor]
           SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple
           LRR repeats Pfam profile: PF00560
          Length = 372

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 137 RIPTSLSSLKHRVHFRRNRHKHCGMILSKFEF 42
           RIP SLSS K   H   + +K CG I + F F
Sbjct: 318 RIPDSLSSAKFVGHLDISHNKLCGRIPTGFPF 349


>At1g13650.2 68414.m01605 expressed protein
          Length = 286

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 486 LLEIFKAKFQPAKNRVKQYPNDLTHHNPHAESAE 587
           +L +  ++  P KN       ++ HHNPH E  E
Sbjct: 70  ILSLEDSQSPPNKNNTNGPEENMVHHNPHLEITE 103


>At1g13650.1 68414.m01604 expressed protein
          Length = 281

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 486 LLEIFKAKFQPAKNRVKQYPNDLTHHNPHAESAE 587
           +L +  ++  P KN       ++ HHNPH E  E
Sbjct: 65  ILSLEDSQSPPNKNNTNGPEENMVHHNPHLEITE 98


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 554 DASQPSCRKRRNRNPNSSFEIRNPDPLRRTE 646
           D+SQ S    R  +P SSF  R   PL+RT+
Sbjct: 167 DSSQGSPVSSRWSSPKSSFSSRRGSPLKRTD 197


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 51  FRKYHTTVLVSVPAKMYTVL*RRERCRDSCVS*CSLASPPLK 176
           +++Y  T L     +MYT +  R R R  C+     A+ P K
Sbjct: 93  YKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAK 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,653,263
Number of Sequences: 28952
Number of extensions: 317322
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)