Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0474.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   4.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   4.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   6.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.2  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 75  WIYXLLLRCMDXLTAHLVLNSYWSP 149
           WI   L+R M  +T +LVL    SP
Sbjct: 308 WIVLHLIRLMYQVTTNLVLKLLTSP 332


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 9   FLFFIKNSRYVSLNVSIFNFNFWIYXLLLRCMDXLTAHL 125
           +LFF ++   V LN  I + + WI+ L L     +T H+
Sbjct: 444 YLFF-ESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 9   FLFFIKNSRYVSLNVSIFNFNFWIYXLLLRCMDXLTAHL 125
           +LFF ++   V LN  I + + WI+ L L     +T H+
Sbjct: 444 YLFF-ESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 9   FLFFIKNSRYVSLNVSIFNFNFWIYXLLLRCMDXLTAHL 125
           +LFF ++   V LN  I + + WI+ L L     +T H+
Sbjct: 444 YLFF-ESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 9   FLFFIKNSRYVSLNVSIFNFNFWIYXLLLRCMDXLTAHL 125
           +LFF ++   V LN  I + + WI+ L L     +T H+
Sbjct: 444 YLFF-ESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 6   LFLFFIKNSRYVSLNVSIFNFNFW 77
           +FLF I  +  +   V+IF   FW
Sbjct: 81  IFLFAIYTNLSILTTVTIFKSAFW 104


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 72  FWIYXLLLRCMDXLTAHLV 128
           F ++ L L C+D  T HL+
Sbjct: 189 FNMHLLFLLCLDYFTLHLL 207


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 70  IFGYMXYCLDVWTS 111
           IF Y   C+++W S
Sbjct: 220 IFTYTSICIEIWQS 233


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 267 RLFQRFRFVFYK 232
           ++F  FRF+FYK
Sbjct: 491 KIFLPFRFLFYK 502


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,526
Number of Sequences: 336
Number of extensions: 1550
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)