Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0474.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_35675| Best HMM Match : TB (HMM E-Value=8.4)                        29   1.6  
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   1.6  
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   3.7  
SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   4.9  
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   4.9  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1147

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 434 NAHATLNPCVPTXADPELX-HXSCVT-AFIAXCHCDXGYLFNSEGK-CVPVAXC 282
           N  + +N C+   ADP L  H  C+  A    C C+ GYL    GK C  +  C
Sbjct: 534 NNSSNINECL---ADPNLCEHGQCINKAGSFMCDCEIGYLPTPNGKGCQDINEC 584


>SB_35675| Best HMM Match : TB (HMM E-Value=8.4)
          Length = 251

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 49  MYLYLTSIFGYMXYCLDVWTS*QPT 123
           M LY + IF Y+ YC+ VW S  P+
Sbjct: 108 MTLYYSLIFPYLQYCICVWGSTYPS 132


>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 165

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 344 CHCDXGYLFNSEGKCVPVAXC 282
           C C  GY  NS+GKC  V  C
Sbjct: 27  CQCAEGYERNSQGKCADVNEC 47


>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 921

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 344 CHCDXGYLFNSEGK-CVPVAXC*I*RGG 264
           C CD GY   S+GK C  +  C I +GG
Sbjct: 378 CACDYGYRLLSDGKTCQDIDECAINKGG 405


>SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 30  SRYVSLNVSIFNFNFWIYXLLLRC--MDXLTAHL 125
           SRY+S+ +S +++  W+    +RC   D LTA L
Sbjct: 304 SRYISIPISNYDYKKWVKVTGVRCTKQDSLTASL 337


>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 541

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = -3

Query: 350 AXCHCDXGYLFNSEGK---CVPVAXC 282
           A C C  GY  N+EGK   CV V  C
Sbjct: 60  ARCECVAGYALNTEGKITRCVDVNEC 85


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -3

Query: 440 PENAHATLNPCVPTX--ADPELX---HXSCVTAFIAXCHCDXGYLFNSEG-KCVPVAXC 282
           P+   +  N CV     ADP++    H    T     C C  GY+ NS+G  C  +  C
Sbjct: 692 PQGYRSDWNKCVDIDECADPQVNKCQHICNNTQASFHCECREGYILNSDGITCSDIDEC 750


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 344 CHCDXGYLFNSEGKCVPVAXC 282
           C C  GY  +S+GKC  V  C
Sbjct: 484 CQCAEGYERDSQGKCADVNEC 504


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 353 IAXCHCDXGYLFNSEGKCVPVAXC 282
           I  C C  GY   S+G+CV +  C
Sbjct: 292 IYQCTCFEGYHLTSDGQCVDINEC 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,165
Number of Sequences: 59808
Number of extensions: 194324
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)