Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0474.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    33   0.15 
U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of s...    31   0.35 
Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical pr...    31   0.46 
U50311-11|AAN84861.1|   86|Caenorhabditis elegans Inhibitor of s...    30   0.81 
U50311-9|AAA92313.1|  137|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83228-9|CAB05737.2|  539|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc...    29   1.9  
Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = -3

Query: 440 PENAHAT--LNPCVPTXADPELXHXSCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           P+N   T  LNPC        L    C       C C  GYL +S+G+C     C
Sbjct: 741 PKNQTMTDCLNPCSEDKCPGILKKTECTNRCGQGCACAYGYLRSSDGECYKPKDC 795


>U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform a
           protein.
          Length = 135

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 416 NPCVPTXA-DPELXHXSCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           N C P     P+     C+   +  C C  G++ NS GKCV V+ C
Sbjct: 31  NTCEPQCGYTPKACTEQCI---MNTCDCKDGFVRNSLGKCVEVSEC 73


>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 416 NPCVPTXADPE-LXHXSCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           NPC       +     +C+ A    C C  G++ N++G CV  A C
Sbjct: 110 NPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAEC 155


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 416 NPCVPTXADPE-LXHXSCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           NPC       +     +C+ A    C C  G++ N++G CV  A C
Sbjct: 110 NPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAEC 155



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 371 SCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           +C+      C C  G+L N +G+CV    C
Sbjct: 190 NCMEKCDIGCSCKKGFLRNRQGQCVNPTEC 219


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 416 NPCVPTXADPE-LXHXSCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           NPC       +     +C+ A    C C  G++ N++G CV  A C
Sbjct: 110 NPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAEC 155



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 371 SCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           +C+      C C  G+L N +G+CV    C
Sbjct: 190 NCMEKCDIGCSCKKGFLRNRQGQCVNPTEC 219



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 368 CVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           C+      C C  G + N +G+CV +A C
Sbjct: 256 CMMRCEKACSCKKGLVRNRQGQCVKLAEC 284


>Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical
           protein Y69H2.3a protein.
          Length = 537

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 416 NPCVPTXADPE-LXHXSCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           NPC       +     +C+ A    C C  G++ N++G CV  A C
Sbjct: 110 NPCTEKKCPQKNAPQVNCLMACQVGCSCMDGFVRNNQGVCVKEAEC 155



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 371 SCVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           +C+      C C  G+L N +G+CV    C
Sbjct: 190 NCMEKCDIGCSCKKGFLRNRQGQCVNPTEC 219


>U50311-11|AAN84861.1|   86|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform b
           protein.
          Length = 86

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 344 CHCDXGYLFNSEGKCVPVAXC 282
           C C  G++ NS GKCV V+ C
Sbjct: 4   CDCKDGFVRNSLGKCVEVSEC 24


>U50311-9|AAA92313.1|  137|Caenorhabditis elegans Hypothetical
           protein C25E10.8 protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 344 CHCDXGYLFNSEGKCVPVAXC 282
           C C  G++ NS GKCV ++ C
Sbjct: 55  CDCKKGFVRNSLGKCVDISTC 75


>Z83228-9|CAB05737.2|  539|Caenorhabditis elegans Hypothetical
           protein F52F12.6 protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 267 SASYSTXGNGHAFSLRVEEVSXITVAGCDESRHATGV 377
           + S  + G G+++S+R E        GCD S H TG+
Sbjct: 243 NGSIPSPGTGYSWSIRREGKLACPTPGCDGSGHQTGL 279


>U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc
           finger proteinC.e-MyT1 protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 267 SASYSTXGNGHAFSLRVEEVSXITVAGCDESRHATGV 377
           + S  + G G+++S+R E        GCD S H TG+
Sbjct: 243 NGSIPSPGTGYSWSIRREGKLACPTPGCDGSGHQTGL 279


>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -3

Query: 440 PENAHATL--NPCVPTXADPELXHXSCVTAFIAXCHCDXGYLFNS----EGKCVPVAXC 282
           P NAH +   + C  T A+P   +  C    +  C CD GY+ ++      KC+ +  C
Sbjct: 490 PLNAHPSTCTSSCPSTCAEPFPEY--CDQGCVDGCECDPGYVIDNTVTGSIKCIRLDQC 546


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -3

Query: 440 PENAHATL--NPCVPTXADPELXHXSCVTAFIAXCHCDXGYLFNS----EGKCVPVAXC 282
           P NAH +   + C  T A+P   +  C    +  C CD GY+ ++      KC+ +  C
Sbjct: 502 PLNAHPSTCTSSCPSTCAEPFPEY--CDQGCVDGCECDPGYVIDNTVTGSIKCIRLDQC 558


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -3

Query: 440 PENAHATL--NPCVPTXADPELXHXSCVTAFIAXCHCDXGYLFNS----EGKCVPVAXC 282
           P NAH +   + C  T A+P   +  C    +  C CD GY+ ++      KC+ +  C
Sbjct: 490 PLNAHPSTCTSSCPSTCAEPFPEY--CDQGCVDGCECDPGYVIDNTVTGSIKCIRLDQC 546


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -3

Query: 440 PENAHATL--NPCVPTXADPELXHXSCVTAFIAXCHCDXGYLFNS----EGKCVPVAXC 282
           P NAH +   + C  T A+P   +  C    +  C CD GY+ ++      KC+ +  C
Sbjct: 502 PLNAHPSTCTSSCPSTCAEPFPEY--CDQGCVDGCECDPGYVIDNTVTGSIKCIRLDQC 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,914,674
Number of Sequences: 27780
Number of extensions: 143032
Number of successful extensions: 370
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)