Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0474.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    28   0.047
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    28   0.047
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 368 CVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           C+      C C  GYL N +  CVP + C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 368 CVTAFIAXCHCDXGYLFNSEGKCVPVAXC 282
           C+      C C  GYL N +  CVP + C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = +3

Query: 321 EVSXITVAGCDESRHATGVXQFRVCXGRHAXVQC 422
           + S  +   CDE R +      +VC  R     C
Sbjct: 322 QASSCSCLDCDEIRESLDTQFLQVCRSRRHSDSC 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,063
Number of Sequences: 438
Number of extensions: 1941
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)