Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0472.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    29   0.29 
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   1.6  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    26   3.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   6.3  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 484 SISLISNSRPLSNTFFYWKVKYRIKIK 404
           S+S +S+S P  + FF+W V Y + ++
Sbjct: 286 SVSSVSSSPPEDHPFFHWNVDYPVTVR 312


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 270 YIRRCCTNKSSLNLAQCHLIFPYAFIFD*TKPFERYTLVMLTTRVFIL 413
           Y+ RC   +  ++ A+ HL+F +    D     +R +L+ LTT + IL
Sbjct: 229 YLGRCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLLIL 276


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 454 LSNTFFYWKVKYRIKIKTRVVNITSVY 374
           L++T+FYW  K      T +  IT+ Y
Sbjct: 101 LTDTYFYWFTKMTAMTGTEMAQITTPY 127


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 499 SRSTVSIS-LISNSRPLSNTFFYWKVKYRIKIKTRVVNITSVYRSNGF 359
           S   + IS LIS+  P     ++W  ++ I     ++ I  ++ SNGF
Sbjct: 54  SPEVIDISNLISSDHPAHPQNWHWAKRWSIVFMFCLMQIYVIWTSNGF 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,566
Number of Sequences: 5004
Number of extensions: 22039
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)