Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0472.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0275 - 20300994-20301150,20301582-20301670,20302779-203029...    33   0.17 

>01_05_0275 -
           20300994-20301150,20301582-20301670,20302779-20302937,
           20303015-20303255,20303453-20303569,20304804-20304866,
           20305009-20305118,20306418-20306495
          Length = 337

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
 Frame = -3

Query: 320 TLC*I*TR--FVRATSTYII*XNKKIVYCIFLDFITXXIKLGSVXSXACRRGCRTXAGSC 147
           T C I T+  F + TSTY++   + I+  + L  +   ++  +    + +   +    + 
Sbjct: 23  TRCTILTKVAFSQGTSTYVLVFYRNIIAAVVLLPVALAVERKTAPPLSLKVSLKLFVHAL 82

Query: 146 CGRTAA-SCRCCGCSWAAFLAVAAI-SISPICSTF 48
           CG +AA +  C G ++++  A +A+ +I P+ + F
Sbjct: 83  CGMSAAMNISCIGLNYSSATAASAVQNIMPVLTFF 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,240,731
Number of Sequences: 37544
Number of extensions: 123060
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)