Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0472.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           CRR C      CC R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRC-CGC 108
           CR  C T   +CC      C C CGC
Sbjct: 104 CRTCCCTRCCTCCRPCCCGCGCGCGC 129



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 170 CRTXAGSCCGRTAASCRCCGCS 105
           CR     CC R    CR C C+
Sbjct: 89  CRPRCCCCCRRCCTCCRTCCCT 110


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           CRR C      CC R    CR  CCGC
Sbjct: 95  CRRCCTCCRTCCCTRCCTCCRPCCCGC 121



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRCCGC 108
           C R C      CCG     C CCGC
Sbjct: 107 CTRCCTCCRPCCCG-CGCGCGCCGC 130



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRC-CGC 108
           CR  C T   +CC      C C CGC
Sbjct: 102 CRTCCCTRCCTCCRPCCCGCGCGCGC 127



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 170 CRTXAGSCCGRTAASCRCCGCS 105
           CR     CC R    CR C C+
Sbjct: 87  CRPRCCCCCRRCCTCCRTCCCT 108


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           CRR C      CC R    CR  CCGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGC 122



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRCCGC 108
           C R C      CCG     C CCGC
Sbjct: 108 CTRCCTCCRPCCCG-CGCGCGCCGC 131



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRC-CGC 108
           CR  C T   +CC      C C CGC
Sbjct: 103 CRTCCCTRCCTCCRPCCCGCGCGCGC 128



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 170 CRTXAGSCCGRTAASCRCCGCS 105
           CR     CC R    CR C C+
Sbjct: 88  CRPKCCCCCRRCCTCCRTCCCT 109


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           CRR C      CC R    CR  CCGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGC 122



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRCCGC 108
           C R C      CCG     C CCGC
Sbjct: 108 CTRCCTCCRPCCCG-CGCGCGCCGC 131



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRC-CGC 108
           CR  C T   +CC      C C CGC
Sbjct: 103 CRTCCCTRCCTCCRPCCCGCGCGCGC 128



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 170 CRTXAGSCCGRTAASCRCCGCS 105
           CR     CC R    CR C C+
Sbjct: 88  CRPRCCCCCRRCCTCCRTCCCT 109


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           CRR C      CC R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTA--ASCRCCGC 108
           CR  C T   +CC        C CCGC
Sbjct: 104 CRTCCCTRCCTCCRPCCCGCGCGCCGC 130



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 170 CRTXAGSCCGRTAASCRCCGCS 105
           CR     CC R    CR C C+
Sbjct: 89  CRPRCCCCCRRCCTCCRTCCCT 110


>Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical
           protein T26E4.10 protein.
          Length = 90

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
 Frame = -3

Query: 293 VRATSTYII*XNKKIVYCIFLDFITXXIKLGSVXSXACRRGCRTXAGSCCGRTA------ 132
           +  T + ++  N++       D +     LG +     + GC      CCG T       
Sbjct: 17  ISTTFSNVVQGNEETALDSTYDMVPGEGVLGQLIRAKRQWGCGCDCWGCCGPTPDPAATP 76

Query: 131 --ASCRCCGCSW 102
              +C CCGC W
Sbjct: 77  APCNCGCCGCGW 88


>Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical
           protein T26E4.9 protein.
          Length = 86

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
 Frame = -3

Query: 206 LGSVXSXACRRGCRTXAGSCCGRTA--------ASCRCCGCSW 102
           LG +     + GC      CCG T          +C CCGC W
Sbjct: 42  LGQLIRAKRQWGCGCDCWGCCGPTPDPAATPAPCNCGCCGCGW 84


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRCCGC 108
           C R C      CCG     C CCGC
Sbjct: 93  CTRCCTCCRPCCCG-CGCGCGCCGC 116



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRC-CGC 108
           CR  C T   +CC      C C CGC
Sbjct: 88  CRTCCCTRCCTCCRPCCCGCGCGCGC 113



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           C   CRT    CC R    CR  CCGC
Sbjct: 84  CCTCCRTC---CCTRCCTCCRPCCCGC 107


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRCCGC 108
           C R C      CCG     C CCGC
Sbjct: 96  CTRCCTCCRPCCCG-CGCGCGCCGC 119



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRC-CGC 108
           CR  C T   +CC      C C CGC
Sbjct: 91  CRTCCCTRCCTCCRPCCCGCGCGCGC 116



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           C   CRT    CC R    CR  CCGC
Sbjct: 87  CCTCCRTC---CCTRCCTCCRPCCCGC 110


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCRC-CGC 108
           CR  C T   +CC      C C CGC
Sbjct: 86  CRTCCCTRCCTCCRPCCCGCGCGCGC 111



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 182 CRRGCRTXAGSCCGRTAASCR--CCGC 108
           C   CRT    CC R    CR  CCGC
Sbjct: 82  CCTCCRTC---CCTRCCTCCRPCCCGC 105


>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.12 protein.
          Length = 1080

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 475 LISNSRPLSNTFFYWKVKYRIKIKTRVVNITSVYR--SNGF 359
           +I++S PL++ + +W+  +R+ I       +  YR  +NGF
Sbjct: 191 VIASSTPLTHEYDFWRFNHRVAIVLAETGGSLCYRKVANGF 231


>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.12 protein.
          Length = 1080

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 475 LISNSRPLSNTFFYWKVKYRIKIKTRVVNITSVYR--SNGF 359
           +I++S PL++ + +W+  +R+ I       +  YR  +NGF
Sbjct: 191 VIASSTPLTHEYDFWRFNHRVAIVLAETGGSLCYRKVANGF 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,528,372
Number of Sequences: 27780
Number of extensions: 128342
Number of successful extensions: 399
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)