Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0472.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   3.1  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 FILILYFTFQ*KNVLLSGREFDIKL 479
           FILI YF F   N L+  R F I+L
Sbjct: 16  FILINYFIFLYFNSLVRFRRFTIEL 40


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 333  PYAFIFD*TKPFERYTL 383
            PYA + D  KP  RYT+
Sbjct: 964  PYAALIDELKPATRYTI 980


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 333  PYAFIFD*TKPFERYTL 383
            PYA + D  KP  RYT+
Sbjct: 960  PYAALIDELKPATRYTI 976


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 475 LISNSRPLSNTFFY 434
           +ISN+ PLSN + Y
Sbjct: 81  IISNNNPLSNNYNY 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,053
Number of Sequences: 438
Number of extensions: 1544
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)