Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0471.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8WWY3 Cluster: U4/U6 small nuclear ribonucleoprotein P... 91 2e-17
UniRef50_Q9N592 Cluster: Putative uncharacterized protein; n=2; ... 75 1e-12
UniRef50_O80740 Cluster: T13D8.6 protein; n=12; Magnoliophyta|Re... 47 3e-04
UniRef50_Q9U0J5 Cluster: Pre-mrna splicing factor, putative; n=7... 46 5e-04
UniRef50_A7AUH1 Cluster: Pre-mRNA processing ribonucleoprotein b... 46 7e-04
UniRef50_Q01E93 Cluster: PrpF31 U4/U6*U5 snRNP-associated pre-mR... 44 0.002
UniRef50_A0DG60 Cluster: Chromosome undetermined scaffold_5, who... 43 0.005
UniRef50_Q4PHP9 Cluster: Putative uncharacterized protein; n=1; ... 43 0.006
UniRef50_Q5KLE9 Cluster: Putative uncharacterized protein; n=1; ... 39 0.10
UniRef50_Q0DXW3 Cluster: Os02g0730100 protein; n=2; Oryza sativa... 38 0.14
UniRef50_A2X983 Cluster: Putative uncharacterized protein; n=1; ... 38 0.14
UniRef50_O42904 Cluster: Pre-mRNA-processing factor 31; n=1; Sch... 38 0.14
UniRef50_Q9M002 Cluster: Putative uncharacterized protein T4C21_... 38 0.18
UniRef50_Q0UMN0 Cluster: Predicted protein; n=15; Pezizomycotina... 38 0.24
UniRef50_Q6CER2 Cluster: Similar to sp|O42904 Schizosaccharomyce... 37 0.31
UniRef50_A5AKX4 Cluster: Putative uncharacterized protein; n=3; ... 35 1.7
UniRef50_Q38YP0 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_Q54HA9 Cluster: Pre-mRNA processing factor 31; n=1; Dic... 33 6.7
>UniRef50_Q8WWY3 Cluster: U4/U6 small nuclear ribonucleoprotein
Prp31; n=42; Eumetazoa|Rep: U4/U6 small nuclear
ribonucleoprotein Prp31 - Homo sapiens (Human)
Length = 499
Score = 90.6 bits (215), Expect = 2e-17
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = -1
Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQ-YGGATSIRRQVSGTASSVAFTPLQGLEIVN 86
G R Q++E TK RISKT YGG ++IR + SGTASSVAFTPLQGLEIVN
Sbjct: 405 GRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVN 464
Query: 85 PQAAETRTNEGNAKYFSNTSGFLSV-GKK 2
PQAAE + E N KYFS+ + FL V G+K
Sbjct: 465 PQAAEKKVAEANQKYFSSMAEFLKVKGEK 493
Score = 62.5 bits (145), Expect = 7e-09
Identities = 33/83 (39%), Positives = 45/83 (54%)
Frame = -2
Query: 504 IEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADI 325
IE+K DK QE P++ R +TE RK ANR++F +I
Sbjct: 324 IERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEI 383
Query: 324 EDDAYQEDLGYTRGTIGKSSTGR 256
E+DAYQEDLG++ G +GKS +GR
Sbjct: 384 EEDAYQEDLGFSLGHLGKSGSGR 406
Score = 43.6 bits (98), Expect = 0.004
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = -3
Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
+LV+ K TLAARVD+ HEST+G +G +L++ +R ++ P
Sbjct: 293 RLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEP 334
>UniRef50_Q9N592 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 504
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/86 (40%), Positives = 53/86 (61%)
Frame = -1
Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
G R +D+KT+ R+S+ GG TSIR +++GTASSV FTP+QGLEI+NP
Sbjct: 416 GRIRTAAVDQKTRARMSQKMMRQMERQKAAGGMTSIRSKMAGTASSVTFTPIQGLEIINP 475
Query: 82 QAAETRTNEGNAKYFSNTSGFLSVGK 5
A E + + YFS++ F+++ +
Sbjct: 476 AAQEQQQCSSTSNYFSSSGSFVNIDR 501
Score = 39.5 bits (88), Expect = 0.059
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = -2
Query: 504 IEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADI 325
+E K +K+ E P++++ R MT+ RK+ANR+NF ++
Sbjct: 333 VESKFEKMLEPPPVKANKALPKPLDKASKKRGGRRTRKMKERLGMTDLRKSANRMNFGEL 392
Query: 324 EDDAYQEDLGYTRGTI--GKSSTGR 256
+D QE +G+ G + G + GR
Sbjct: 393 GEDVMQEHMGFDIGQVKTGNVTGGR 417
Score = 33.1 bits (72), Expect = 5.1
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = -3
Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQ 516
K+++ K+TL AR+DA HES++G G +
Sbjct: 302 KILAAKVTLVARIDAQHESSNGEKGAE 328
>UniRef50_O80740 Cluster: T13D8.6 protein; n=12; Magnoliophyta|Rep:
T13D8.6 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 511
Score = 47.2 bits (107), Expect = 3e-04
Identities = 30/86 (34%), Positives = 43/86 (50%)
Frame = -1
Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
G NRL +K++I+ GGAT+ SG SS+AFTP+QG+E+ NP
Sbjct: 430 GSNRLRVSSVPSKLKINAKVAKKLKERQYAGGATT-----SGLTSSLAFTPVQGIELCNP 484
Query: 82 QAAETRTNEGNAKYFSNTSGFLSVGK 5
Q A + + YFS + F + K
Sbjct: 485 QQALGLGSGTQSTYFSESGTFSKLKK 510
>UniRef50_Q9U0J5 Cluster: Pre-mrna splicing factor, putative; n=7;
Plasmodium|Rep: Pre-mrna splicing factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 566
Score = 46.4 bits (105), Expect = 5e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -1
Query: 139 GTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSV 11
G +SS+ FTPLQG+E+ NP + + KYFSNT+ F +
Sbjct: 524 GLSSSLIFTPLQGIELYNPSLINAKNKQTENKYFSNTAEFRKI 566
>UniRef50_A7AUH1 Cluster: Pre-mRNA processing ribonucleoprotein
binding region-containing protein; n=3;
Piroplasmida|Rep: Pre-mRNA processing ribonucleoprotein
binding region-containing protein - Babesia bovis
Length = 483
Score = 46.0 bits (104), Expect = 7e-04
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = -1
Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSVG 8
+G +SS+ FTPLQG+E+ NP+AA+ + NA N+ GF VG
Sbjct: 436 NGMSSSLVFTPLQGIELCNPEAAKPAPKKKNA-ILDNSGGFFKVG 479
Score = 35.5 bits (78), Expect = 0.96
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -3
Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLR 510
KLVS KL+LAA++D E+TDG +G + R
Sbjct: 284 KLVSGKLSLAAKIDMFKEATDGSMGAEYR 312
Score = 32.3 bits (70), Expect = 8.9
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = -2
Query: 504 IEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADI 325
IE+ L K QE P E+ R A++EFRK ANRL F +
Sbjct: 315 IEQALQKAQEPPPAPLKKSLPVPEERKSTKRGGKRLRKAKERLAVSEFRKYANRLKFGEE 374
Query: 324 EDDAYQEDLGYTRGTIGK 271
++ Y + G G +GK
Sbjct: 375 AEEEYGLESGDGFGMLGK 392
>UniRef50_Q01E93 Cluster: PrpF31 U4/U6*U5 snRNP-associated pre-mRNA
processing factor 31,; n=2; Ostreococcus|Rep: PrpF31
U4/U6*U5 snRNP-associated pre-mRNA processing factor 31,
- Ostreococcus tauri
Length = 505
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 142 SGTASSVAFTPLQGLEIVNPQAAET-RTNEGNAKYFSNTSGFLSVGKK 2
+GTASS+AFTP+QG+E+VNP ++ G FS GF +V ++
Sbjct: 455 AGTASSLAFTPIQGIELVNPNRVQSDGPVSGTDSVFSERRGFSNVARQ 502
Score = 34.3 bits (75), Expect = 2.2
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 378 YAMTEFRKNANRLNFADIEDDAYQ-EDLGYTRGTIGKSS-TGRTDYXXXXXXXXXXXXRH 205
Y +T+ RK ANR+NF ++E+ Y E LG + G ++ GR +
Sbjct: 384 YGITDMRKAANRVNFNEVEEVGYDGEGLGLLGSSAGSAAIAGRLRLQAKAAKLIKTDNKG 443
Query: 204 CKRTYRNNSSTA 169
K T+ + S TA
Sbjct: 444 GKSTFASTSGTA 455
>UniRef50_A0DG60 Cluster: Chromosome undetermined scaffold_5, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_5,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 463
Score = 43.2 bits (97), Expect = 0.005
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = -1
Query: 139 GTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSVGKK 2
G SS+AFTP QG+E++NP+A ++ +YF+ SGF +V KK
Sbjct: 412 GLTSSIAFTPTQGIELINPEAG--YLSKVPDQYFNRESGFRTVLKK 455
>UniRef50_Q4PHP9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 561
Score = 42.7 bits (96), Expect = 0.006
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Frame = -1
Query: 172 GGATSIRRQ--VSGTASSVAFTPLQGLEIVNPQAAETRTN-EG--NAKYFSNTSGFLSVG 8
GG +S+ R V GTASS++FTP+QG+E+V+P T +G NAK+F L G
Sbjct: 482 GGMSSVLRGGLVDGTASSLSFTPVQGIELVDPSRQSTAGRAQGVENAKWFKQGQFSLLRG 541
Query: 7 KK 2
K
Sbjct: 542 AK 543
>UniRef50_Q5KLE9 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 553
Score = 38.7 bits (86), Expect = 0.10
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -1
Query: 172 GGATSIRRQVSGTASSVAFTPLQGLEIVNPQ-AAETRTNEGNAKYFS 35
G + + SG A+S++FTP+QGLEIV P +A + N ++FS
Sbjct: 487 GRSVTSNDAASGMATSLSFTPVQGLEIVTPSLSAAQKVQAANDRWFS 533
>UniRef50_Q0DXW3 Cluster: Os02g0730100 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os02g0730100 protein -
Oryza sativa subsp. japonica (Rice)
Length = 402
Score = 38.3 bits (85), Expect = 0.14
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSGFLSVGKK 2
SG S++AFTP+QG+E+ NP + G + YFS+ F S+ K
Sbjct: 340 SGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIRGK 387
>UniRef50_A2X983 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 480
Score = 38.3 bits (85), Expect = 0.14
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSGFLSVGKK 2
SG S++AFTP+QG+E+ NP + G + YFS+ F S+ K
Sbjct: 418 SGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIRGK 465
>UniRef50_O42904 Cluster: Pre-mRNA-processing factor 31; n=1;
Schizosaccharomyces pombe|Rep: Pre-mRNA-processing
factor 31 - Schizosaccharomyces pombe (Fission yeast)
Length = 518
Score = 38.3 bits (85), Expect = 0.14
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = -1
Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
G R ID +TK+R+ K A SG SS++FTP+QG+E+VNP
Sbjct: 429 GKIRAVSIDSRTKLRLPKARKAQLQSM-----AQKNPLAASGLQSSLSFTPIQGIELVNP 483
Query: 82 QAAETRTNEGNAKYF 38
+ E K+F
Sbjct: 484 LLQRQQKVEEANKWF 498
>UniRef50_Q9M002 Cluster: Putative uncharacterized protein T4C21_20;
n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
protein T4C21_20 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 442
Score = 37.9 bits (84), Expect = 0.18
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = -1
Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
G RL ++K++I+ GGAT+ SG SS+AFT +QG+E+ NP
Sbjct: 366 GSKRLRVSSVQSKLKINAKVAKKLKERQYAGGATT-----SGLTSSLAFTSMQGIELCNP 420
Query: 82 QAA 74
Q A
Sbjct: 421 QQA 423
Score = 32.7 bits (71), Expect = 6.7
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
+LV+ K TLAARVDA E G G+ RE ++ ++ P
Sbjct: 256 RLVAAKSTLAARVDATREDPLGISGKAFREEIRKKIDKWQEP 297
>UniRef50_Q0UMN0 Cluster: Predicted protein; n=15;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 560
Score = 37.5 bits (83), Expect = 0.24
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Frame = -1
Query: 262 GPNRLPQIDEKTKVRISK---------TXXXXXXXXXQYGG---ATSIRRQ--------V 143
G R QID KT+ ++SK T +G ATS+R Q +
Sbjct: 429 GRLRAQQIDPKTRAKLSKKQGAGWGGDTTLGAASSLKGFGAGGTATSLRAQGLRTGGVGL 488
Query: 142 SGTA-SSVAFTPLQGLEIVNPQAAETRTNEGNA 47
GT SS+AFTP+QGLE+V+P+A E + A
Sbjct: 489 GGTGTSSIAFTPVQGLELVDPRAREEMNRKRKA 521
>UniRef50_Q6CER2 Cluster: Similar to sp|O42904 Schizosaccharomyces
pombe Pre-mRNA splicing factor prp31; n=1; Yarrowia
lipolytica|Rep: Similar to sp|O42904 Schizosaccharomyces
pombe Pre-mRNA splicing factor prp31 - Yarrowia
lipolytica (Candida lipolytica)
Length = 522
Score = 37.1 bits (82), Expect = 0.31
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -3
Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRE 507
+++S KL LAAR+DA STDG G ++RE
Sbjct: 303 RMLSAKLVLAARLDASRASTDGSFGSKMRE 332
>UniRef50_A5AKX4 Cluster: Putative uncharacterized protein; n=3; Vitis
vinifera|Rep: Putative uncharacterized protein - Vitis
vinifera (Grape)
Length = 1501
Score = 34.7 bits (76), Expect = 1.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEGNAK-YFSNTSGFLSV 11
SG SS F P+QG+++ NPQA + G YFS F +
Sbjct: 1454 SGLTSSSVFPPVQGIKLSNPQAHANQLGSGTQSIYFSEIGTFSKI 1498
>UniRef50_Q38YP0 Cluster: Putative uncharacterized protein; n=1;
Lactobacillus sakei subsp. sakei 23K|Rep: Putative
uncharacterized protein - Lactobacillus sakei subsp.
sakei (strain 23K)
Length = 328
Score = 33.9 bits (74), Expect = 2.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -2
Query: 192 YRNNSSTAVLPVLEDKYLVLRLLWPSRLYRVWKSSILKPQKLGPTKAMPSISLIHPGSYL 13
YR T P+LE +LVLRLL ++Y+V++ Q+L T + Y
Sbjct: 174 YRTQPET---PLLETAHLVLRLLADQQVYQVFEKMTFTDQQLRQTLRQQGYDFVSVDQYE 230
Query: 12 WER 4
W R
Sbjct: 231 WLR 233
>UniRef50_Q54HA9 Cluster: Pre-mRNA processing factor 31; n=1;
Dictyostelium discoideum AX4|Rep: Pre-mRNA processing
factor 31 - Dictyostelium discoideum AX4
Length = 1054
Score = 32.7 bits (71), Expect = 6.7
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = -1
Query: 175 YGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTS 26
YGG+ + SG AS VA TP+QGL++ Q + N+ KYFS++S
Sbjct: 999 YGGSMT-SASTSGLAS-VAITPVQGLQLSITQNIREQDNK-TEKYFSSSS 1045
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,745,350
Number of Sequences: 1657284
Number of extensions: 7877023
Number of successful extensions: 23327
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23262
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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