Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.0  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   2.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.9  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 168 VLPVLEDKYLVLRLLWPSRLYRVWKSSILKPQKL 67
           +LP+ ++ YL++     + L   W  ++LK  KL
Sbjct: 70  MLPIYKNTYLIILFADFAYLETTWICTLLKKDKL 103


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 168 VLPVLEDKYLVLRLLWPSRLYRVWKSSILKPQKL 67
           +LP+ ++ YL++     + L   W  ++LK  KL
Sbjct: 88  MLPIYKNTYLIILFADFAYLETTWICTLLKKDKL 121


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 11  HR*EPGCIREILG 49
           H  EP CI E+LG
Sbjct: 352 HTPEPDCIHELLG 364


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 114 RLYRVWKSSILKPQKLGPT 58
           +L+R+ KSS L+P   G T
Sbjct: 896 KLFRMKKSSALRPASGGTT 914


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 84  LKPQKLGPTKAMPSISLIHPGS 19
           L+PQ+L PT      +  HP +
Sbjct: 76  LQPQRLAPTHLQSPNTQTHPSA 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,124
Number of Sequences: 336
Number of extensions: 1769
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)