Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    38   8e-04
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   2.1  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   3.6  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   8.4  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    25   8.4  

>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 25/75 (33%), Positives = 35/75 (46%)
 Frame = -1

Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
           G  R   ID +TK+R+ K              A       SG  SS++FTP+QG+E+VNP
Sbjct: 429 GKIRAVSIDSRTKLRLPKARKAQLQSM-----AQKNPLAASGLQSSLSFTPIQGIELVNP 483

Query: 82  QAAETRTNEGNAKYF 38
                +  E   K+F
Sbjct: 484 LLQRQQKVEEANKWF 498



 Score = 31.9 bits (69), Expect = 0.073
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKR 495
           ++ + K+ LAAR+D+ HE  DG  G   R+  +R
Sbjct: 317 RMTAAKVALAARIDSIHEYPDGSFGISARKEVER 350



 Score = 28.3 bits (60), Expect = 0.90
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = -2

Query: 504 IEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADI 325
           +E+K++KL E            P ++               +YA+TE R+  NR+ F   
Sbjct: 348 VERKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTELRRLQNRVAFGKE 407

Query: 324 EDDAYQEDLGYTRGTIGKSSTGR 256
           E + +  D     G +G+   G+
Sbjct: 408 EAEVFNFDETEGLGMLGQEGEGK 430


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 162 PVLEDKYLVLRLLWPSRLYRVWK 94
           P+ + K L+L LLW S L  +WK
Sbjct: 59  PLFDQKSLILYLLWFSTLTLLWK 81


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 102 VWKSSILKPQKLGPTKAMPSISLIHP 25
           VWKSS+ KP+   PT     +S I P
Sbjct: 579 VWKSSVTKPET--PTSPQEHVSYIDP 602


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 427 KQEEERRQTCQEDEGALRYDRVQEERQPTK 338
           K +EE R+   E E  +R  R+QEE +  K
Sbjct: 359 KAQEEERKRQAEIEKEIRQSRLQEEERKKK 388


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 397 DTFAASLLPALFDRLR 444
           D F+  LLPALF+RL+
Sbjct: 246 DAFSKLLLPALFERLK 261


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -2

Query: 96  KSSILKPQKLGPTKAMPSISLIHPGSY---LWE 7
           +SS +K   LGP      IS  HPG Y   LWE
Sbjct: 190 ESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWE 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,602
Number of Sequences: 5004
Number of extensions: 32264
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)