Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217...    42   5e-04
02_05_0621 - 30417044-30417196,30417511-30417586,30418055-304181...    38   0.005
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649...    31   0.92 
02_05_0819 - 32014236-32016059                                         28   4.9  
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180...    27   8.6  

>07_01_0304 +
           2177044-2177046,2177173-2177235,2177323-2177460,
           2177886-2178778,2178935-2179005,2179132-2179234,
           2180017-2180092,2180870-2180977
          Length = 484

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSGFLSV 11
           SG  SS+AFTP+QG+E+ NPQ+       G  + YFS T  F  +
Sbjct: 437 SGLTSSLAFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSKI 481



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
           +L++ K TLAAR+++      G  GR L E  ++    ++ P
Sbjct: 294 RLIAAKSTLAARINSIRGDPTGKAGRNLLEEIRKKIEKWQEP 335


>02_05_0621 -
           30417044-30417196,30417511-30417586,30418055-30418157,
           30418269-30418339,30418446-30418789,30419867-30420004,
           30420089-30420151,30420392-30420489,30421049-30421179,
           30422397-30422428
          Length = 402

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSGFLSVGKK 2
           SG  S++AFTP+QG+E+ NP      +  G  + YFS+   F S+  K
Sbjct: 340 SGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIRGK 387



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRE 507
           +++S K TLAAR+D+      G  G  L E
Sbjct: 197 RIISAKSTLAARIDSIRGDPTGKAGHSLLE 226


>04_04_0750 +
           27763841-27763972,27764311-27764485,27764908-27764998,
           27764999-27765133,27765683-27765742,27765876-27765951,
           27766037-27766174,27766509-27767373,27767763-27767865,
           27768101-27768176,27768329-27768393,27768463-27768493,
           27768618-27768725
          Length = 684

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
           +L++ K TLAAR+D+      G  GR L E  ++    ++ P
Sbjct: 495 RLIAAKSTLAARIDSIRGDPTGKAGRNLLEEIRKKIEKWQEP 536



 Score = 24.2 bits (50), Expect(2) = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 103 GLEIVNPQAAETRTNEG-NAKYFSNTSGFLSV 11
           G+E+ NPQA       G  + YFS T  F  +
Sbjct: 650 GIELSNPQAHGNLLGSGTQSTYFSETGTFSKI 681



 Score = 22.6 bits (46), Expect(2) = 4.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 142 SGTASSVAFTPLQ 104
           SG  SS+AFTP+Q
Sbjct: 605 SGLTSSLAFTPVQ 617


>02_05_0819 - 32014236-32016059
          Length = 607

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 436 DRTKQEEERRQTCQEDEGALRYDRVQEERQ 347
           D  +  E+RR++ +E E  +  DR++EER+
Sbjct: 377 DLEQPREQRRESREEREARIERDRIREERR 406


>06_01_0237 -
           1808203-1809159,1809246-1809399,1809488-1809636,
           1809715-1809997,1810087-1810192,1810293-1810383,
           1810779-1811270
          Length = 743

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 SVGVSRTSPVGVPVVYLVSFRCFPQL 518
           S+G+    P   P+ +LVSFR  P +
Sbjct: 544 SIGLGEDGPTHQPIEHLVSFRAMPNI 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,756
Number of Sequences: 37544
Number of extensions: 223527
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)