Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18905| Best HMM Match : Nop (HMM E-Value=0)                         42   3e-04
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_41587| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_41023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34633| Best HMM Match : IF3_N (HMM E-Value=7.9)                     28   6.6  
SB_11695| Best HMM Match : CHASE3 (HMM E-Value=1)                      28   6.6  
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      27   8.7  

>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
          Length = 194

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/30 (60%), Positives = 26/30 (86%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRE 507
           ++V+ K TLAARVD+ HEST+G IG++L+E
Sbjct: 129 RIVAAKCTLAARVDSFHESTEGTIGKRLQE 158


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 166 ATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNA-KYFSNTSGFLS 14
           AT    Q S   ++   T LQ  E  NP A ++  N GN   Y++  + +L+
Sbjct: 338 ATDQAYQQSAYVAATPSTLLQSAEYNNPNAGQSLNNSGNTPAYYTQYTSYLA 389


>SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 427 KQEEERRQTCQEDEGALR-YDRVQEERQPTKL 335
           ++EEE  +  +E EG     D+ QEERQP+++
Sbjct: 513 EEEEEEEEETKEGEGEEEEQDKQQEERQPSEI 544


>SB_41587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 439 ADRTKQEEERRQTCQEDEGALRYDRVQEERQPTKLC 332
           AD++  +E+      E  G  R+ +   ERQP K+C
Sbjct: 54  ADKSLSKEQESVPDDEPRGYHRFQKKPSERQPHKVC 89


>SB_41023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 439 ADRTKQEEERRQTCQEDEGALRYDRVQEERQPTKLC 332
           AD++  +E+      E  G  R+ +   ERQP K+C
Sbjct: 76  ADKSLSKEQESVPDDEPRGYHRFQKKPSERQPHKVC 111


>SB_34633| Best HMM Match : IF3_N (HMM E-Value=7.9)
          Length = 257

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 439 ADRTKQEEERRQTCQEDEGALRYDRVQEERQPTKLC 332
           AD++  +E+      E  G  R+ +   ERQP K+C
Sbjct: 79  ADKSLSKEQESVPDDEPRGYHRFQKKPSERQPHKVC 114


>SB_11695| Best HMM Match : CHASE3 (HMM E-Value=1)
          Length = 562

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 436 DRTKQEEERRQTCQEDEGALRYDRVQEERQPTKL 335
           D  ++EEE      E E     D+ QEERQP+++
Sbjct: 28  DEEEEEEEEETKEGEGEEEEEQDKQQEERQPSEI 61


>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 330

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 254 PTTANRRENEGPHQQD---IAKELTETTAVRRCYQY*KTSIWYC 132
           PT  N+R N+   +Q+       L  TT ++RCYQ     ++YC
Sbjct: 78  PTFENQRFNQYDLRQNPLYYPLGLPNTTVIQRCYQEEAFPLYYC 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,859
Number of Sequences: 59808
Number of extensions: 254716
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)