Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processi...    91   4e-18
AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated ...    91   4e-18
AF308303-1|AAG48270.1|  278|Homo sapiens serologically defined b...    44   5e-04
AK098547-1|BAC05329.1|  364|Homo sapiens protein ( Homo sapiens ...    42   0.001

>BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processing
           factor 31 homolog (S. cerevisiae) protein.
          Length = 499

 Score = 90.6 bits (215), Expect = 4e-18
 Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
 Frame = -1

Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQ-YGGATSIRRQVSGTASSVAFTPLQGLEIVN 86
           G  R  Q++E TK RISKT           YGG ++IR + SGTASSVAFTPLQGLEIVN
Sbjct: 405 GRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVN 464

Query: 85  PQAAETRTNEGNAKYFSNTSGFLSV-GKK 2
           PQAAE +  E N KYFS+ + FL V G+K
Sbjct: 465 PQAAEKKVAEANQKYFSSMAEFLKVKGEK 493



 Score = 62.5 bits (145), Expect = 1e-09
 Identities = 33/83 (39%), Positives = 45/83 (54%)
 Frame = -2

Query: 504 IEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADI 325
           IE+K DK QE            P++                R  +TE RK ANR++F +I
Sbjct: 324 IERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEI 383

Query: 324 EDDAYQEDLGYTRGTIGKSSTGR 256
           E+DAYQEDLG++ G +GKS +GR
Sbjct: 384 EEDAYQEDLGFSLGHLGKSGSGR 406



 Score = 43.6 bits (98), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
           +LV+ K TLAARVD+ HEST+G +G +L++  +R    ++ P
Sbjct: 293 RLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEP 334


>AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated 61
           kDa protein protein.
          Length = 499

 Score = 90.6 bits (215), Expect = 4e-18
 Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
 Frame = -1

Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQ-YGGATSIRRQVSGTASSVAFTPLQGLEIVN 86
           G  R  Q++E TK RISKT           YGG ++IR + SGTASSVAFTPLQGLEIVN
Sbjct: 405 GRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVN 464

Query: 85  PQAAETRTNEGNAKYFSNTSGFLSV-GKK 2
           PQAAE +  E N KYFS+ + FL V G+K
Sbjct: 465 PQAAEKKVAEANQKYFSSMAEFLKVKGEK 493



 Score = 62.5 bits (145), Expect = 1e-09
 Identities = 33/83 (39%), Positives = 45/83 (54%)
 Frame = -2

Query: 504 IEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADI 325
           IE+K DK QE            P++                R  +TE RK ANR++F +I
Sbjct: 324 IERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEI 383

Query: 324 EDDAYQEDLGYTRGTIGKSSTGR 256
           E+DAYQEDLG++ G +GKS +GR
Sbjct: 384 EEDAYQEDLGFSLGHLGKSGSGR 406



 Score = 43.6 bits (98), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
           +LV+ K TLAARVD+ HEST+G +G +L++  +R    ++ P
Sbjct: 293 RLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEP 334


>AF308303-1|AAG48270.1|  278|Homo sapiens serologically defined
           breast cancer antigen NY-BR-99 protein.
          Length = 278

 Score = 43.6 bits (98), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
           +LV+ K TLAARVD+ HEST+G +G +L++  +R    ++ P
Sbjct: 213 RLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEP 254


>AK098547-1|BAC05329.1|  364|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25681 fis, clone TST04131. ).
          Length = 364

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 18/34 (52%), Positives = 27/34 (79%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKR 495
           +LV+ K TLAARVD+ HEST+G +G +L++  +R
Sbjct: 293 RLVAAKCTLAARVDSFHESTEGKVGYELKDEIER 326


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,919,730
Number of Sequences: 237096
Number of extensions: 1222395
Number of successful extensions: 2973
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2973
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)