Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    75   3e-14

>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 35/86 (40%), Positives = 53/86 (61%)
 Frame = -1

Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
           G  R   +D+KT+ R+S+            GG TSIR +++GTASSV FTP+QGLEI+NP
Sbjct: 416 GRIRTAAVDQKTRARMSQKMMRQMERQKAAGGMTSIRSKMAGTASSVTFTPIQGLEIINP 475

Query: 82  QAAETRTNEGNAKYFSNTSGFLSVGK 5
            A E +     + YFS++  F+++ +
Sbjct: 476 AAQEQQQCSSTSNYFSSSGSFVNIDR 501



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -2

Query: 504 IEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADI 325
           +E K +K+ E            P++++              R  MT+ RK+ANR+NF ++
Sbjct: 333 VESKFEKMLEPPPVKANKALPKPLDKASKKRGGRRTRKMKERLGMTDLRKSANRMNFGEL 392

Query: 324 EDDAYQEDLGYTRGTI--GKSSTGR 256
            +D  QE +G+  G +  G  + GR
Sbjct: 393 GEDVMQEHMGFDIGQVKTGNVTGGR 417



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQ 516
           K+++ K+TL AR+DA HES++G  G +
Sbjct: 302 KILAAKVTLVARIDAQHESSNGEKGAE 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,324,893
Number of Sequences: 27780
Number of extensions: 184990
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)