Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 137 YCVFCGLHAST 105
           YCV CGLH  T
Sbjct: 542 YCVACGLHRDT 552


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 11  HR*EPGCIREILG 49
           H  EP CI E+LG
Sbjct: 330 HTPEPDCIHELLG 342


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 364 LGHSVTLLHLPDTFAASLL 420
           L +  T +H  DT+AAS++
Sbjct: 142 LAYQATKIHAVDTYAASVV 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 510 PQLPTDVPIGALVARVHTGR*C 575
           PQLPT+  + AL   +H    C
Sbjct: 455 PQLPTEESVDALCNTLHHWHHC 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,827
Number of Sequences: 438
Number of extensions: 2277
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)