Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0471.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    47   8e-06
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ...    28   5.4  
At3g10480.2 68416.m01257 no apical meristem (NAM) family protein...    27   7.2  
At3g10480.1 68416.m01256 no apical meristem (NAM) family protein...    27   7.2  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 30/86 (34%), Positives = 43/86 (50%)
 Frame = -1

Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
           G NRL      +K++I+             GGAT+     SG  SS+AFTP+QG+E+ NP
Sbjct: 404 GSNRLRVSSVPSKLKINAKVAKKLKERQYAGGATT-----SGLTSSLAFTPVQGIELCNP 458

Query: 82  QAAETRTNEGNAKYFSNTSGFLSVGK 5
           Q A    +   + YFS +  F  + K
Sbjct: 459 QQALGLGSGTQSTYFSESGTFSKLKK 484



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 596 KLVSTKLTLAARVDACHESTDGHIGRQLRETSKRN*INYRNP 471
           +LV+ K TLAARVDA      G  G+  RE  ++    ++ P
Sbjct: 294 RLVAAKSTLAARVDATRGDPLGISGKAFREEIRKKIEKWQEP 335


>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 265

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 254 PTTANRRENEG-PHQQDIAKELTETTAVRRCYQY*KTSIWYCVFCGLHAST 105
           P   N  + +G P +++  +E      ++      +   WYC+FCG    T
Sbjct: 199 PEKKNEEDEDGKPDEEEEEEEEITEEDLQEILMKLRAEHWYCLFCGFQYET 249


>At3g10480.2 68416.m01257 no apical meristem (NAM) family protein
           similar to  to NAC2 (GI:645671) [Arabidopsis thaliana];
           contains Pfam PF02365: No apical meristem (NAM) protein;
           N-terminus similar to unknown protein GB:AAD25613
           [Arabidopsis thaliana]
          Length = 446

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 424 QEEERRQTCQEDEGALRYDRVQEERQPTKLC 332
           QE       +EDE  L+ +  +E+ +P  LC
Sbjct: 266 QESNNHSGYEEDEDTLKREHAEEDERPPSLC 296


>At3g10480.1 68416.m01256 no apical meristem (NAM) family protein
           similar to  to NAC2 (GI:645671) [Arabidopsis thaliana];
           contains Pfam PF02365: No apical meristem (NAM) protein;
           N-terminus similar to unknown protein GB:AAD25613
           [Arabidopsis thaliana]
          Length = 447

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 424 QEEERRQTCQEDEGALRYDRVQEERQPTKLC 332
           QE       +EDE  L+ +  +E+ +P  LC
Sbjct: 267 QESNNHSGYEEDEDTLKREHAEEDERPPSLC 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,864
Number of Sequences: 28952
Number of extensions: 174983
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)