Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0470.Seq
         (459 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.006
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.32 
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    33   3.0  
UniRef50_Q3KLW6 Cluster: Transporter; n=7; Chlamydiaceae|Rep: Tr...    33   3.9  
UniRef50_Q7S239 Cluster: Putative uncharacterized protein NCU098...    32   6.8  
UniRef50_Q18EB2 Cluster: Putative uncharacterized protein; n=2; ...    31   9.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.9 bits (94), Expect = 0.006
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = -1

Query: 408 LRLVDELTAHLVLSGYWSP 352
           LR VDELTAHLVLSGYWSP
Sbjct: 157 LRWVDELTAHLVLSGYWSP 175



 Score = 31.5 bits (68), Expect = 9.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 355 PIDIYNVNAPPTMRYKF 305
           P  +Y+VNAPPT RYKF
Sbjct: 175 PRHLYDVNAPPTSRYKF 191


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.3 bits (80), Expect = 0.32
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 230 AGWWYLPVRTPKRSYHQ 180
           A WWYLP RT KRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 459 PLEVDGIDKLDIEF 418
           PLEVDGIDKLDIEF
Sbjct: 290 PLEVDGIDKLDIEF 303


>UniRef50_Q3KLW6 Cluster: Transporter; n=7; Chlamydiaceae|Rep:
           Transporter - Chlamydia trachomatis (strain A/HAR-13 /
           ATCC VR-571B)
          Length = 691

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 124 FTVEVNREHFLSTYFIRKIGTRLRDSNTGASLHT 23
           F ++   E F S YFI   G+RL ++N  A LHT
Sbjct: 462 FVIKNRVEEFRSAYFIAIYGSRLLENNFSAQLHT 495


>UniRef50_Q7S239 Cluster: Putative uncharacterized protein
           NCU09875.1; n=2; Sordariales|Rep: Putative
           uncharacterized protein NCU09875.1 - Neurospora crassa
          Length = 520

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +2

Query: 62  GTNFSNEIRTQEMFTIDFHSEGITSCNKN*TRKIIICVITGGRTSWESARVGTTTP 229
           G + +  I T +   +DFH E +TSC +N  RKIII  +T G   +E   +G   P
Sbjct: 91  GRDVTVVIPTVDPLGVDFH-ECLTSCARNGPRKIII--VTAGEDLYEKT-LGAVAP 142


>UniRef50_Q18EB2 Cluster: Putative uncharacterized protein; n=2;
           Haloquadratum walsbyi DSM 16790|Rep: Putative
           uncharacterized protein - Haloquadratum walsbyi (strain
           DSM 16790)
          Length = 238

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 313 ISWWVAHLHCRCLWAPVTT*HQVGCELVHQSKS 411
           +S W+   HC   W+P T   + GC   H ++S
Sbjct: 182 VSVWITCQHCGDRWSPATFLDESGCRCAHDTES 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,525,800
Number of Sequences: 1657284
Number of extensions: 9726964
Number of successful extensions: 19427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19426
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)