Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0470.Seq
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   4.2  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    27   5.5  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    27   5.5  

>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 255 RFGSKGGVAVVTILRP*NLYLMVGGAFTL*MSMGSSNHLTPG 380
           + G  G + V+   R   + LM+GG     ++MG + HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 32  RCTGVRIPQAGTNFSNEIRTQEMFTIDFHSE 124
           RCTGV I   G N   +I T      DFH E
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 59  AGTNFSNEIRTQEMFTIDFHSEGITSC-NKN*TRKIIICVITGGRTSWESARVGTTTPPI 235
           +GT+   +    E+  +D    GIT+C  +N  +K    ++ G      + RV   T  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 236 SAV 244
           +AV
Sbjct: 89  NAV 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,956
Number of Sequences: 37544
Number of extensions: 278301
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)