Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0469.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 32 0.40
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 32 0.40
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 31 0.53
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 30 1.2
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 1.6
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 30 1.6
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.8
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8) 28 5.0
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 28 5.0
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_5696| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 28 6.6
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 27 8.7
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2) 27 8.7
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 9.4
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 534 LKRFLVVE*RKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 388
+K FLV + K KS + P P+ P P P PP PG +P
Sbjct: 50 VKTFLVSQLEKKLEEAKSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 98
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 534 LKRFLVVE*RKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 388
+K FLV + K KS + P P+ P P P PP PG +P
Sbjct: 251 VKTFLVSQLEKKLEEAKSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 299
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 435 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 307
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 31.5 bits (68), Expect = 0.53
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 555 PKATPRHLKRFLVVE*RKSGSGHKSATDSHPQPIRRAP--TVPAAPIPPQARPGQAQPLQ 382
P+ PR + + V+ +K + S P P P T PAAP P +A P A ++
Sbjct: 226 PRKRPRQILPYAVIHLKKQHKDQPTGP-SQPLPAAVPPIKTKPAAPSPVKATPTVAPLVK 284
Query: 381 AVLLPRAVQVHRTLPPLRLVF 319
A + + + PLR+++
Sbjct: 285 ATPMVAPLVKAKLPQPLRILY 305
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -2
Query: 468 HPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 316
HP P+RR P+ A+ IPP RP ++P++ P + H +LP RL +P
Sbjct: 27 HP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 303 QA*TDFYTSLVKEKYALLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 160
Q+ +Y VKEK H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 447 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 334
+P +P AP+ P P P +A+ P LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = -2
Query: 597 PAQVEELLPAQRQPPKATPRHLKRFLVVE*RKS--GSGHKSATDSHPQPIRRAPTVPAA- 427
PAQ +E L P+A+PR +++ S H T S + ++PA
Sbjct: 390 PAQADEALSTMPSEPRASPRMQRKYSPTSGPSSYKQKKHLQVTLSSAANTTKGASLPATK 449
Query: 426 ---PIPPQARPGQAQPL 385
P+P + P + QP+
Sbjct: 450 SGPPVPKRTHPVKPQPI 466
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -2
Query: 441 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 334
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 480 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 334
AT H Q + P+PP P Q+ P +L+P + LPP
Sbjct: 617 ATPPHLQSTAQPRPTTVPPLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
Length = 562
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 200 KHRYSYGDGKEYRICFRSKAYFSLTRLV 283
+H +S GD ++ IC SKAY L R V
Sbjct: 432 EHEFSLGDAEKEFICATSKAYEELIRNV 459
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 435 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKEKYA 256
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 255 LLRKHIRYSLP 223
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 507 RKSGSGHKSATDSHPQPIRRAPTVPAAPI--PPQARPGQAQPLQAVLLPRAVQVHRTLPP 334
RK S + DS P P RRA T P + P RP Q A P + R P
Sbjct: 137 RKRCSSYSEEEDSAPSPKRRAST-PEVRVKEEPVDRPASPQQHSAPASPAREEKERKSTP 195
Query: 333 LR 328
+R
Sbjct: 196 VR 197
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 486 KSATDSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA 379
+ A ++ +P ++ P VP + PQA PG P+ A
Sbjct: 109 RKAPENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMA 145
>SB_5696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 555 PKATPRHLKRFLVVE*RKSGSGHKSATDSHPQPIRRAP--TVPAAPIPPQARPGQAQPLQ 382
P+ PR + + V+ +K + S P P P T PAAP P +A P A ++
Sbjct: 171 PRKRPRQILPYAVIHLKKQHKDQPTGP-SQPLPAAVPPIKTKPAAPSPVKATPTVAPLVK 229
Query: 381 A 379
A
Sbjct: 230 A 230
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -2
Query: 507 RKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLP 337
+ + S S + P +P+VP P PP +PG A + + + V+ +
Sbjct: 2297 KDANSSPGSNSTRSPSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIA 2356
Query: 336 PLRLVFP 316
P RL P
Sbjct: 2357 PTRLALP 2363
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Frame = -2
Query: 558 PPKATPRHLKRFLVVE*RKSGSGHKSA----TDSHPQPIRRAPTVPAAPIPPQARPGQAQ 391
PP P + R ++ G+ H ++ T P P R P+ P P PP P +
Sbjct: 172 PPTRLPGNA-RVNAIDQISIGTSHPTSPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPP 230
Query: 390 PLQAVLLPRAVQVHRTLPP 334
P PR + PP
Sbjct: 231 PPPPPSPPRPLAAKLPEPP 249
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 477 TDSHPQPIRRA-PTVP-AAPIPPQARPGQAQPLQAVLLP 367
T P P R + P VP A+P PP ARP P + + P
Sbjct: 42 TSPQPMPGRNSSPIVPRASPQPPTARPYGTSPGTSAMSP 80
>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = -2
Query: 597 PAQVEELLPAQRQPPKATPRHLKRFLVVE*RKSGSGHKSATD----SHPQPIRRAPTVPA 430
P Q+ + P Q P+ + LVVE ++ S + + PQ ++ P
Sbjct: 427 PPQLPTMAPQLTQQETYQPQVNQGVLVVEPTQAVSTQQQVIQPVGPTGPQGTQQQVIQPV 486
Query: 429 APIPPQARPGQA-QPLQAVLLPRAVQVHRTLP 337
P PQ QA QP+Q P+ Q TLP
Sbjct: 487 WPTQPQGTQQQASQPIQPTQ-PQGTQQQGTLP 517
>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
Length = 531
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 307 HSGVNRLLHKPGQGKICLASKTY 239
H G+NR K +G +C+A KTY
Sbjct: 18 HYGMNRHERKSVRGDLCVAKKTY 40
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 9.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 334 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 432
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 9.4
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +1
Query: 409 CLRWNRCCW 435
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,706
Number of Sequences: 59808
Number of extensions: 365362
Number of successful extensions: 1098
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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