Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0469.Seq
         (598 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    25   1.4  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   9.9  
AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.        23   9.9  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   9.9  

>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 471 SHPQPIRRAPTVPAAPIPPQ-ARPGQAQP 388
           +HP P+R  P+VP  P+P Q A P   QP
Sbjct: 424 THP-PVRPTPSVP-RPLPSQEASPSGEQP 450


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 582 ELLPAQRQPPKATPRHLKRFLVVE*RKSGSGHKSATDSHP 463
           +LLPA R+P  +    L++ L+   R +   ++S+ ++ P
Sbjct: 30  QLLPAVRRPLLSDAEKLEQRLLAPNRNADFDNESSEETQP 69


>AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 258 ALLRKHIRYSLPSP 217
           +LL +HI+Y +P P
Sbjct: 81  SLLHEHIKYDVPKP 94


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 422 FHLKHVRGKHNHFRQFFYLGRF 357
           FHL  V   H +FR++ ++  F
Sbjct: 923 FHLSQVLTGHGYFREYLHVCGF 944


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,710
Number of Sequences: 2352
Number of extensions: 11931
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)