Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0469.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 34 0.067
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 31 0.62
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 29 3.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 4.4
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 4.4
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 4.4
AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical... 28 4.4
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 28 5.8
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 28 5.8
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 28 5.8
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 5.8
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 5.8
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 28 5.8
Z93372-5|CAI70403.1| 104|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 7.7
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 27 7.7
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 27 7.7
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 34.3 bits (75), Expect = 0.067
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -2
Query: 588 VEELLPAQRQPPKATPRHLKRFLVVE*RKSGSGHKSATDSHPQPIRRAPTVPAAPI---- 421
V++ PAQ+Q +A P ++ VV+ + + P + PTV API
Sbjct: 51 VQQTQPAQKQQAQAPPA-AQQIPVVQQAPPAQPAQQKPVAQAPPAQAKPTVQQAPILVAQ 109
Query: 420 -PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 322
PP QAQ QA P A Q+ PP +V
Sbjct: 110 APPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 465 PQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 337
P+PI ++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 248 PKPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 465 PQP-IRRAPTVPAAPIPPQARPGQAQPLQ 382
P+P +++APT AAP PP+ P QA P+Q
Sbjct: 311 PKPAVQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -2
Query: 483 SATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 334
S Q AP A PI Q +P Q Q QA + + V + PP
Sbjct: 30 SPAQQQQQAQAHAPPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAPP 79
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 31.1 bits (67), Expect = 0.62
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 573 PAQRQPPKATPRHLKRFLVVE*RKSGSGHKSATDSHPQPIRR--APTVPAAPIPPQARPG 400
P Q PP TP+ +R RKSG T S AP VPAAP+ P
Sbjct: 686 PQQPPPPLPTPKPPRR------RKSGQKTDQTTPSSDAEASSDPAPPVPAAPVAPVVPIV 739
Query: 399 QAQPLQAVLLP 367
P+ V LP
Sbjct: 740 PIVPVHPVPLP 750
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 31.1 bits (67), Expect = 0.62
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 573 PAQRQPPKATPRHLKRFLVVE*RKSGSGHKSATDSHPQPIRR--APTVPAAPIPPQARPG 400
P Q PP TP+ +R RKSG T S AP VPAAP+ P
Sbjct: 686 PQQPPPPLPTPKPPRR------RKSGQKTDQTTPSSDAEASSDPAPPVPAAPVAPVVPIV 739
Query: 399 QAQPLQAVLLP 367
P+ V LP
Sbjct: 740 PIVPVHPVPLP 750
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 334 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 450
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 465 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVL-LPRAVQVHRTLPPLRLVFP 316
P+P R+ + AP+ P ARP P A L L A + + P R + P
Sbjct: 725 PKPPRKKKPIAEAPLRPPARPAPIVPTSAGLSLVLAASLPTSSTPSRFLNP 775
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 392 NHFRQFFYLGRFK--YIGR--FLHFV*CFQESSFRREQTFTQAWSRKNMPCFENIFD 234
+ F++ F+LG + Y+ R LHF + S F+ T+ A +PC++++ +
Sbjct: 615 DRFKEDFHLGHIQSSYLMRNGSLHFAVHEETSPFKPNTTYQMAQGTSYLPCYKHVLE 671
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 465 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 367
P P VP +PPQ RP Q P+Q P
Sbjct: 348 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 465 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 367
P P VP +PPQ RP Q P+Q P
Sbjct: 445 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 465 PQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 325
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 15 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 107
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical
protein F32D1.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 552 KATPRHLKRFLVVE*RKSGSGHKSATDSHPQ--PIRRAPTVPAAPIPPQARPGQA 394
+A PR + + + E SGSG S DS P R + VP+ PP RP A
Sbjct: 143 QAVPRTISK--ISEESGSGSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPPA 195
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 480 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 331
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 312 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 360
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 480 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 331
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 408 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 456
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 480 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 331
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 380 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 428
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 468 HPQPIRRAPTVPAAPIPPQARPGQAQPL 385
+PQ AP P AP P A P A PL
Sbjct: 57 YPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 444 PTVP-AAPIPPQARPGQAQP 388
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 480 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 331
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 312 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 360
>Z93372-5|CAI70403.1| 104|Caenorhabditis elegans Hypothetical
protein BE10.5 protein.
Length = 104
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 486 KSATDSHPQPIRRAPTVPAAPIPPQARPGQAQ 391
K + H QP+ P P AP+ P R + Q
Sbjct: 19 KKGENRHDQPLAPQPAQPGAPLTPDRRTEKKQ 50
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 480 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPR-AVQVHRTLP 337
A + PIR +AP PP+ P +A +A+ + A +V R P
Sbjct: 382 AASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAP 430
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 500 QDPVTKALPTVIHNR*DEHRQCQQHRF 420
QD + P+ IH+ D HR C +H F
Sbjct: 656 QDKLQFLQPSTIHSTSDLHRICNEHEF 682
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 459 PIRRAPTVPAAPIPPQ---ARPGQ--AQPLQAVLLPRAVQVHRTLP 337
P +AP P AP+ P+ ARP +P AV RA Q+ + P
Sbjct: 267 PSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAP 312
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 465 PQPIRRAPTVPAAPIPPQARPGQAQPLQA 379
PQP ++P + A P PP P Q P QA
Sbjct: 72 PQPYAQSP-IAAVPPPPPPPPPQPAPAQA 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,938
Number of Sequences: 27780
Number of extensions: 273849
Number of successful extensions: 1000
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -