Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0468.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   120   1e-28
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   120   1e-28
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   5.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   7.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   7.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   9.4  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  120 bits (290), Expect = 1e-28
 Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
 Frame = -3

Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDH 77
           DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H
Sbjct: 54  DDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSH 113

Query: 76  EEARRKHLGGKILGFFF 26
            EAR K  GGKILGFF+
Sbjct: 114 NEARAKDAGGKILGFFY 130



 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = -1

Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEF 262
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEF 50


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  120 bits (290), Expect = 1e-28
 Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
 Frame = -3

Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDH 77
           DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H
Sbjct: 54  DDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSH 113

Query: 76  EEARRKHLGGKILGFFF 26
            EAR K  GGKILGFF+
Sbjct: 114 NEARAKDAGGKILGFFY 130



 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = -1

Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEF 262
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEF 50


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -1

Query: 366 NAEKRGKRQVLI--RPCSKVIVKFLTVMMKHGYIGEFEIVMITEL 238
           +A+  G R V++  RPC      FLT+M ++ Y+ E  I +++++
Sbjct: 67  DAQLGGIRNVVLINRPCFAASDNFLTLMGQNWYLKERNINVLSDI 111


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = +3

Query: 51  PRCFLLASSWSMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTT 230
           P    + S +S+ P +   T     R        S+S   +      TPH F  PV   +
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNAS 197

Query: 231 ILPAL 245
            LPAL
Sbjct: 198 PLPAL 202


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 236 ASSVIITISNSPM*PCFIITVKNLTMTLEQGLMRTCLFP--RFSALCIDFKASLNT 397
           A +  + I ++P  PC I  V+    + +  L+R  L+P  R S L +D  + L T
Sbjct: 343 AGTKFLKIDSTPSTPCLISVVRTGFRSNKGQLIRNLLYPNLRPSQLYLDSMSFLKT 398


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 132 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 43
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 121 FGYLVLTTSGGIMDHEEARRKHLGGKIL 38
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,230
Number of Sequences: 5004
Number of extensions: 49080
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)