Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0468.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 135 2e-32
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 124 5e-29
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 83 2e-16
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 45 5e-05
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 29 4.2
04_04_1281 - 32370253-32370519,32371046-32371190,32371546-32371778 29 4.2
11_01_0526 - 4140853-4141017,4141416-4141619 28 5.6
02_05_0523 - 29755007-29755856,29756381-29756940,29757058-297572... 27 9.7
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 135 bits (327), Expect = 2e-32
Identities = 61/77 (79%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDH 77
DDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDH
Sbjct: 54 DDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDH 113
Query: 76 EEARRKHLGGKILGFFF 26
EEARRK++GGK+LGFF+
Sbjct: 114 EEARRKNVGGKVLGFFY 130
Score = 91.1 bits (216), Expect = 7e-19
Identities = 42/53 (79%), Positives = 49/53 (92%)
Frame = -1
Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE V
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFV 53
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 124 bits (300), Expect = 5e-29
Identities = 58/73 (79%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDH 77
DDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDH
Sbjct: 54 DDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDH 113
Query: 76 EEARRKHLGGKIL 38
EEARRK++GGK L
Sbjct: 114 EEARRKNVGGKEL 126
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/53 (77%), Positives = 49/53 (92%)
Frame = -1
Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE V
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFV 53
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/76 (46%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDH 77
D HR GKI V L GR+ C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DH
Sbjct: 53 DPHRVGKINVELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDH 112
Query: 76 EEARRKHLGGKILGFF 29
EEA ++++GG++LG+F
Sbjct: 113 EEAIKQNVGGQVLGYF 128
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = -1
Query: 396 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVI 52
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = -3
Query: 274 HRRV*NRDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 155
HRR+ DDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 906 HRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 648 DMSYRRSIERIWVPHTSMRTRPPSSEMLSKCCGGH 544
++ +++S+E I + S R R P + + +CCG H
Sbjct: 450 EIMFQKSMEEIVIAAPSGRQRFPGTVIKKRCCGWH 484
>04_04_1281 - 32370253-32370519,32371046-32371190,32371546-32371778
Length = 214
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 564 LASHSTADASSLMYVAPIFSLCFGDRTC 647
LASH+T D + Y+ P + FG + C
Sbjct: 158 LASHNTGDPLTCSYLVPSYGTAFGIKGC 185
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 238 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 143
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>02_05_0523 -
29755007-29755856,29756381-29756940,29757058-29757275,
29757941-29758067
Length = 584
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 555 SICLASHSTADASSLMYVAPIFSLCFGDR 641
S+C+AS S + S+M V+ + SL GDR
Sbjct: 498 SLCMASISLGNYVSIMLVSVVTSLTAGDR 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,920
Number of Sequences: 37544
Number of extensions: 314269
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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