Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0468.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             76   3e-14
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_19978| Best HMM Match : DUF229 (HMM E-Value=0.00021)                28   5.7  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = -1

Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 280
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = -3

Query: 199 CGVISPRFDVPINDIERW-TNLLPSRQF 119
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 378 KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 253
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 546  DLHSICLASHSTADASSLMYVAPIFSLCFGDRTC 647
            DLH   ++ HST   SS    A IF+    DRTC
Sbjct: 1239 DLHKALMSLHSTDKPSSDYKQAGIFAKIPADRTC 1272


>SB_19978| Best HMM Match : DUF229 (HMM E-Value=0.00021)
          Length = 552

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 546 DLHSICLASHSTADASSLMYVAPIFSLCFGDRTC 647
           DLH   ++ HST   SS    A IF+    DRTC
Sbjct: 241 DLHKALMSLHSTDKPSSDYKQAGIFAKIPADRTC 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,965
Number of Sequences: 59808
Number of extensions: 364412
Number of successful extensions: 1975
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)