Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0468.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   3.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  

>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 171 TSKRGEMT-PHLFSLPVRFTTILPAL*SSRFQTL 269
           TS  G+ T    F + V F   LP+L   +FQT+
Sbjct: 49  TSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTV 82


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 253 HDFKLSDVTVLHHH 294
           H F++ +VT++ HH
Sbjct: 350 HSFQMKNVTIVDHH 363


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 171 TSKRGEMT-PHLFSLPVRFTTILPAL*SSRFQTL 269
           TS  G+ T    F + V F   LP+L   +FQT+
Sbjct: 51  TSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTV 84


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +3

Query: 543 YDLHSICLASHSTADASSLMYVAPIFSLCFGDRT 644
           Y+ H   L      DA       P    C+ DRT
Sbjct: 739 YEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRT 772


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,091
Number of Sequences: 438
Number of extensions: 3264
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)