Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0468.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 135 3e-32
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 135 3e-32
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 135 3e-32
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 133 8e-32
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 129 1e-30
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 90 1e-18
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 89 2e-18
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 29 2.7
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 8.1
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 135 bits (326), Expect = 3e-32
Identities = 61/77 (79%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDH 77
DDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDH
Sbjct: 54 DDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDH 113
Query: 76 EEARRKHLGGKILGFFF 26
EEARRK++GGK+LGFF+
Sbjct: 114 EEARRKNVGGKVLGFFY 130
Score = 91.1 bits (216), Expect = 6e-19
Identities = 42/53 (79%), Positives = 49/53 (92%)
Frame = -1
Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE V
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYV 53
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 135 bits (326), Expect = 3e-32
Identities = 61/77 (79%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDH 77
DDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDH
Sbjct: 54 DDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDH 113
Query: 76 EEARRKHLGGKILGFFF 26
EEARRK++GGK+LGFF+
Sbjct: 114 EEARRKNVGGKVLGFFY 130
Score = 91.1 bits (216), Expect = 6e-19
Identities = 42/53 (79%), Positives = 49/53 (92%)
Frame = -1
Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE V
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYV 53
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 135 bits (326), Expect = 3e-32
Identities = 61/77 (79%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDH 77
DDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDH
Sbjct: 54 DDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDH 113
Query: 76 EEARRKHLGGKILGFFF 26
EEARRK++GGK+LGFF+
Sbjct: 114 EEARRKNVGGKVLGFFY 130
Score = 91.1 bits (216), Expect = 6e-19
Identities = 42/53 (79%), Positives = 49/53 (92%)
Frame = -1
Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE V
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYV 53
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 133 bits (322), Expect = 8e-32
Identities = 60/77 (77%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDH 77
DDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDH
Sbjct: 54 DDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDH 113
Query: 76 EEARRKHLGGKILGFFF 26
EEARRK++GGK+LGFF+
Sbjct: 114 EEARRKNVGGKVLGFFY 130
Score = 89.4 bits (212), Expect = 2e-18
Identities = 41/53 (77%), Positives = 48/53 (90%)
Frame = -1
Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE V
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYV 53
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 129 bits (312), Expect = 1e-30
Identities = 57/77 (74%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDH 77
DDHR+GKIVV L GRLN CGVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDH
Sbjct: 60 DDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDH 119
Query: 76 EEARRKHLGGKILGFFF 26
EEAR+K++GGK+LGFF+
Sbjct: 120 EEARKKNVGGKVLGFFY 136
Score = 85.8 bits (203), Expect = 2e-17
Identities = 40/53 (75%), Positives = 46/53 (86%)
Frame = -1
Query: 411 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 253
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE V
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYV 59
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/77 (50%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDH 77
D HR G+I V+L GR+N C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DH
Sbjct: 53 DPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDH 112
Query: 76 EEARRKHLGGKILGFFF 26
EEA ++++GG++LGFF+
Sbjct: 113 EEAIKRNVGGQVLGFFY 129
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = -1
Query: 396 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEI 256
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQV 51
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/76 (51%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Frame = -3
Query: 253 DDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDH 77
D HR G+I V+L GR+N C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+DH
Sbjct: 53 DPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDH 112
Query: 76 EEARRKHLGGKILGFF 29
EEA ++++GG++LGFF
Sbjct: 113 EEAIKRNVGGQVLGFF 128
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 396 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEI 256
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQV 51
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 301 FNSDDEAR-LHRRV*NRDDHRAGKIVVNLTGRLNKCG 194
F + DEAR LH RV R DH G N+ G L K G
Sbjct: 338 FMNIDEARELHIRVERRRDHMTGDYFENIGGMLFKDG 374
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 259 NRDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVL 104
N DHRAG+ V + RL+ + P + IN + + L FGY +L
Sbjct: 1374 NNTDHRAGEEAVVKSKRLDDGSLKVPPLPININVKPKSSLQLAVSTFGYQIL 1425
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,276,442
Number of Sequences: 28952
Number of extensions: 257662
Number of successful extensions: 461
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -