Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0465.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    67   1e-12
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    27   1.0  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   3.1  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   7.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   7.1  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    24   9.4  

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 33/62 (53%), Positives = 47/62 (75%)
 Frame = +3

Query: 60  VRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 239
           +++++ RQ + Q+L+  +++SSA M +K L  VT  ESP+VVVLS SMEP+F RGDLLFL
Sbjct: 1   MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFL 60

Query: 240 TN 245
            N
Sbjct: 61  DN 62



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 26/62 (41%), Positives = 40/62 (64%)
 Frame = +2

Query: 257 PVRVGEIVXFKVXGRDIPIVHRVLKLHEKNNGXVKFLTKGDNNSVDDXXLXAQGQLWLTK 436
           PV +G+IV + +  R IPIVHRV+KL+E  N     +TKGDNN +DD  +  +   +L +
Sbjct: 84  PVGIGDIVVYSLPDRPIPIVHRVVKLYESEN-QTHLITKGDNNKIDDVAMFPKSINYLDR 142

Query: 437 KD 442
           ++
Sbjct: 143 EN 144


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -2

Query: 325 YSVNNRDIPALYFEXNNFSNADRLSG*LVKNSKSPL*KAGSILPDSTTTIGLSLPVTTIK 146
           + +N  D P L+F  N+F    RLS    + +   + KA  IL      I +  PVT   
Sbjct: 62  FDINEPDKPDLHFLRNHFIREGRLS---EEQTLYIIKKATEILKSEDNLIEVDAPVTVCG 118

Query: 145 PFH 137
             H
Sbjct: 119 DIH 121


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 371  WLRTLLXHCSFHVVSILCEQSGYPGPXL*XQQFLQRGQALRVI 243
            W R      ++HV+   C +SG P   L  ++ LQ  + L+ +
Sbjct: 1337 WKRGTNISYNYHVLKDWCLESGVPEAYLQLEELLQTSKILQFV 1379


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 169 SLPVTTIKPFHIIKAEDTIIPKLNTWYMNCRLF 71
           ++P    + FH+ KA  TI  K + W   C L+
Sbjct: 242 TMPFRAPELFHV-KAGSTITEKADIWSFGCTLY 273


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 82  CRLFIRRTSSNRLSNI 35
           CRL +R+TS +++SNI
Sbjct: 397 CRLAVRQTSPDKVSNI 412


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 202 WSQLFTEETCCF*PITLRACPRWRNCXLQS 291
           + Q F + T C+ PIT RA P   N  + S
Sbjct: 202 FEQQFFDITYCYFPITFRAPPDATNLAITS 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,723
Number of Sequences: 5004
Number of extensions: 31695
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)