Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0465.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1125 - 9268507-9268557,9268771-9268828,9268920-9269007,926... 81 4e-16
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473... 81 4e-16
02_05_1306 - 35595177-35595218,35595591-35595636,35595687-355957... 78 3e-15
03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865 45 2e-05
02_02_0275 + 8478374-8478706 31 0.57
04_04_1021 + 30190403-30190450,30191245-30192924 29 2.3
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279... 28 3.0
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 28 4.0
04_03_0093 - 11085882-11087339 27 5.3
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 27 7.0
06_03_0825 - 25109742-25110473,25110546-25110833,25110930-251109... 27 7.0
04_04_1022 + 30195703-30195753,30195925-30195987,30197535-301978... 27 7.0
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 27 9.2
04_04_0395 - 24911449-24911719,24912048-24912400,24912486-249125... 27 9.2
>06_01_1125 -
9268507-9268557,9268771-9268828,9268920-9269007,
9269162-9269207,9269304-9269339,9269438-9269509,
9269946-9270058,9271626-9271740,9273728-9273772
Length = 207
Score = 81.0 bits (191), Expect = 4e-16
Identities = 37/44 (84%), Positives = 42/44 (95%)
Frame = +3
Query: 108 GMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 239
GMIV+SAL+IWKGL+VVTGSESP+VVVLSGSMEP F RGD+LFL
Sbjct: 54 GMIVTSALIIWKGLIVVTGSESPVVVVLSGSMEPGFKRGDILFL 97
Score = 81.0 bits (191), Expect = 4e-16
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +2
Query: 233 VFNQLP*EPVRVGEIVXFKVXGRDIPIVHRVLKLHEK-NNGXVKFLTKGDNNSVDDXXLX 409
+F + +P+R GEIV F V GR+IPIVHRV+K+HE+ + V LTKGDNN DD L
Sbjct: 95 LFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNFGDDRLLY 154
Query: 410 AQGQLWLTKKDVV 448
A GQLWL + ++
Sbjct: 155 AHGQLWLQQHHIM 167
>05_03_0370 +
13144612-13144639,13144749-13145260,13146995-13147327,
13147690-13147699,13149704-13149816,13151187-13151258,
13151397-13151432,13151552-13151597,13151726-13151828,
13151916-13151973,13152231-13152281
Length = 453
Score = 81.0 bits (191), Expect = 4e-16
Identities = 37/44 (84%), Positives = 41/44 (93%)
Frame = +3
Query: 108 GMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 239
GMIV+SAL+IWKGLMV TGSESP+VVVLSGSMEP F RGD+LFL
Sbjct: 295 GMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRGDILFL 338
Score = 72.5 bits (170), Expect = 1e-13
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Frame = +2
Query: 233 VFNQLP*EPVRVGEIVXFKVXGRDIPIVHRVLKLHEK-NNGXVKFLTK-----GDNNSVD 394
+F + +P+R GEIV F + GR+IPIVHRV+K+HE+ + V LTK GDNN D
Sbjct: 336 LFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHEREESAEVDILTKVNCFSGDNNFGD 395
Query: 395 DXXLXAQGQLWLTKKDVV 448
D L A GQLWL + ++
Sbjct: 396 DRLLYAHGQLWLHQHHIM 413
>02_05_1306 -
35595177-35595218,35595591-35595636,35595687-35595778,
35595945-35596013,35596153-35596265,35596503-35596542
Length = 133
Score = 78.2 bits (184), Expect = 3e-15
Identities = 35/57 (61%), Positives = 46/57 (80%)
Frame = +3
Query: 69 MNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 239
M R + +++ GM++SSALMIWKGL+++TGSESP+VVVLS SME F RGD+LFL
Sbjct: 1 MQIRHALVHLITLGMVISSALMIWKGLIIMTGSESPLVVVLSESMELGFERGDILFL 57
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 233 VFNQLP*EPVRVGEIVXFKVXGRDIPIVHRVLKL 334
+F Q+ P+R G+IV F GR+IPIVHRV+++
Sbjct: 55 LFLQMSKHPIRTGDIVVFN-DGREIPIVHRVIEV 87
>03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865
Length = 648
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +2
Query: 260 VRVGEIVXFKVXGRDIPIVHRVLKLHEKNNGXVK-FLTKGDN 382
+R G+IV F +PIVHRV++LHE+++G + LTKG N
Sbjct: 86 IRAGDIVLFSTELHPVPIVHRVIELHERHDGGARQMLTKGAN 127
Score = 30.3 bits (65), Expect = 0.75
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 147 LMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 239
L++ + + VV+SGSMEP RGD+L +
Sbjct: 43 LLLGKATGTTATVVVSGSMEPGIRRGDMLIV 73
>02_02_0275 + 8478374-8478706
Length = 110
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 111 MIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFH 218
+I S L + L++VTGS SP+ V +SG P H
Sbjct: 3 LITLSCLCLCLLLLLVTGSSSPVSVSVSGDRCPVLH 38
>04_04_1021 + 30190403-30190450,30191245-30192924
Length = 575
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 42 ESLFDDVRRMNKRQFMYQVLSFGMIVSSALMIW 140
++ D R+M+ + Y + FGMIVS ++W
Sbjct: 185 DNAVDRERKMSFFSWFYMCVDFGMIVSGLFIVW 217
>02_05_0243 -
27124559-27124864,27126922-27126990,27127741-27127926,
27128572-27129093
Length = 360
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 254 EPVRVGEIVXFKVXGRDIPIVHRVLKLHEK-NNG 352
+P R G +V V G+ +P+ +LH K NNG
Sbjct: 265 QPRRSGRVVTVSVVGKQVPLYGAGAELHSKPNNG 298
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -2
Query: 208 GSILPD-----STTTIGLSLPVTTIKPFHIIKAEDTII 110
GS PD S +G+S PV++ K H+ KAED I
Sbjct: 18 GSSAPDVEQQKSVAAVGVSSPVSSSKHHHMAKAEDGTI 55
>04_03_0093 - 11085882-11087339
Length = 485
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 62 AANEQAAVHVPSVKLWYDSVFCLDDMERFDGSNRK*KPN 178
A+++ V VP + LW ++ CL + + N K KPN
Sbjct: 394 ASDDNQGVRVP-LSLWESNIECLHKLRKIKLHNYKGKPN 431
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -2
Query: 208 GSILPD-----STTTIGLSLPVTTIKPFHIIKAEDTII 110
GS PD S +G S PV++ K H+ KAED I
Sbjct: 18 GSSAPDVEQQKSVAAVGASSPVSSSKHHHMAKAEDGTI 55
>06_03_0825 -
25109742-25110473,25110546-25110833,25110930-25110993,
25111855-25111912,25111913-25112168,25112310-25112532,
25112614-25112742,25113651-25113856
Length = 651
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -2
Query: 208 GSILPD-----STTTIGLSLPVTTIKPFHIIKAEDTII 110
GS PD S +G S PV++ K H+ KAED I
Sbjct: 18 GSSAPDVEQQKSVAAVGASSPVSSSKHHHMAKAEDGTI 55
>04_04_1022 +
30195703-30195753,30195925-30195987,30197535-30197843,
30197934-30199292
Length = 593
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 54 DDVRRMNKRQFMYQVLSFGMIVSSALMIW 140
D R+M+ + Y + FGMIVS ++W
Sbjct: 209 DRERKMSFFSWFYICVDFGMIVSGLFIVW 237
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 190 STTTIGLSLPVTTIKPFHIIKAEDTII 110
S +G S PV++ K H+ KAED I
Sbjct: 29 SVAAVGASSPVSSSKHHHMAKAEDGTI 55
>04_04_0395 -
24911449-24911719,24912048-24912400,24912486-24912560,
24912799-24912891,24912988-24913231,24913437-24913564
Length = 387
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 274 FSNADRLSG*LVKNSKSPL*KAGSILPDSTTTIGLSLPVTTIKP 143
F ++ R+ G LV P+ A ++P ST G LPV I+P
Sbjct: 184 FISSQRIVGCLVAE---PIKTAHKVIPGSTEENGTDLPVDKIEP 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,418
Number of Sequences: 37544
Number of extensions: 193226
Number of successful extensions: 455
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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