Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0465.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 126 6e-30
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4) 27 7.2
SB_57938| Best HMM Match : Cadherin (HMM E-Value=0.0027) 27 9.5
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74) 27 9.5
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33) 27 9.5
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 126 bits (305), Expect = 6e-30
Identities = 60/67 (89%), Positives = 63/67 (94%)
Frame = +3
Query: 48 LFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGD 227
+FDDVRRMNKRQ YQVL+F +IVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAF RGD
Sbjct: 6 MFDDVRRMNKRQLFYQVLNFAIIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFQRGD 65
Query: 228 LLFLTNY 248
LLFLTNY
Sbjct: 66 LLFLTNY 72
Score = 113 bits (271), Expect = 8e-26
Identities = 51/65 (78%), Positives = 56/65 (86%)
Frame = +2
Query: 254 EPVRVGEIVXFKVXGRDIPIVHRVLKLHEKNNGXVKFLTKGDNNSVDDXXLXAQGQLWLT 433
+P+RVGEIV FKV GR+IPIVHRVLK+HEK NG +KFLTKGDNNSVDD L A GQLWL
Sbjct: 75 DPIRVGEIVVFKVEGREIPIVHRVLKVHEKENGDIKFLTKGDNNSVDDRGLYAPGQLWLA 134
Query: 434 KKDVV 448
KKDVV
Sbjct: 135 KKDVV 139
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 188 YYYYWAFTSCYYHQTFPYHQGRRHYH 111
YYYY+ + YY+ + Y+ HY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYY 134
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 203 HTA*QYYYYWAFTSCYYHQTFPYHQGRRHYH 111
H YYYY+ + YY+ + Y+ +YH
Sbjct: 101 HAYYYYYYYYYYYYYYYYYYYYYYYYYYYYH 131
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 188 YYYYWAFTSCYYHQTFPYHQGRRHYH 111
YYYY+ + YY+ + YH +Y+
Sbjct: 113 YYYYYYYYYYYYYYYYYYHHYYYYYY 138
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 188 YYYYWAFTSCYYHQTFPYHQGRRHYH 111
YYYY+ + YYH + Y+ +Y+
Sbjct: 119 YYYYYYYYYYYYHHYYYYYYYYYYYY 144
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 188 YYYYWAFTSCYYHQTFPYHQGRRHYHT 108
YYYY+ + YY+ + Y+ +YH+
Sbjct: 140 YYYYYYYYYYYYYYYYYYYYYYYYYHS 166
>SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 27.5 bits (58), Expect = 5.4
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -2
Query: 319 VNNRDIPALYFEXNNFSNADRLSG*LVKNSKSPL*KAGSILPDSTTTIGLSLPVTTIKPF 140
V +D+ E N+ ++ +G ++++ L + G LP + +GLS KPF
Sbjct: 185 VQIKDVNFYKAEKNSAASRKSSTGLIIQSQNEILKRLGD-LPHNDQPVGLSTFANFAKPF 243
Query: 139 HIIKAEDTIIPKL 101
I KA IPKL
Sbjct: 244 -IHKAPIPNIPKL 255
>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
Length = 296
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 215 KSWLHTA*QYYYYWAFTSCYYHQTFPYHQGRRHYH 111
KS L YYYY+ + YY+ + YH +Y+
Sbjct: 252 KSRLLAMDYYYYYYYYYYYYYYYYYYYHYYYYYYY 286
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 188 YYYYWAFTSCYYHQTFPYHQGRRHYH 111
YYYY+ + YYH + Y+ +Y+
Sbjct: 267 YYYYYYYYYYYYHYYYYYYYYYYYYY 292
>SB_57938| Best HMM Match : Cadherin (HMM E-Value=0.0027)
Length = 164
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 39 LESLFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVV 158
++ L+D V R + +Y+ ++ +I+S +I KG+ VV
Sbjct: 71 MKLLYDIVVRATDTRGLYKEMTLTIIISECFVIRKGIFVV 110
>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
Length = 604
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 306 ISRPXTLKXTISPTRTGSQGNWLKTASLLCEKLA 205
ISRP L +S T T ++ +WLK L E L+
Sbjct: 207 ISRPGNLPVELSTTCTQTEWSWLKDIELYEEILS 240
>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
Length = 725
Score = 26.6 bits (56), Expect = 9.5
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Frame = -2
Query: 277 NFSNADRLSG*LVKNSKSPL*KAGSILPDS---TTTIGLSLPVTTIKPFH-IIKAED--T 116
NFS++ +S V S + L S+L S +T +GLSLPVT P + + D T
Sbjct: 179 NFSSSSDMSVLDVIQSSNELSTLSSLLQLSGVGSTLVGLSLPVTIFAPVNAAFSSVDNVT 238
Query: 115 IIPKLNTWYMNCRLFI---RRTSSNRLSNIVNL 26
I T +N I R TSS S++V+L
Sbjct: 239 IRYLTTTQQINVEDLITMNRITSSTEESSLVSL 271
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,712,952
Number of Sequences: 59808
Number of extensions: 239041
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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