Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0465.Seq
         (449 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    27   0.40 
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      23   6.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    22   8.7  

>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 193 DSTTTIGLSLPVTTIKPFHIIKAEDTIIPKLNTWYMNCRL 74
           ++ T   LSL  T     H    + T  P+LN WY +CR+
Sbjct: 154 ENLTIADLSLVPTIASAVHC-GLDLTNYPRLNAWYESCRV 192


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 185 YYYWAFTSCYYHQTFPY 135
           YYY+ FT C    T+ Y
Sbjct: 22  YYYYLFTQCNPLSTYLY 38


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 27   KLTMLESLFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSME 206
            K   +  L+DDVR+    +FM     F +I      +++  M+  G ++ + +V   SM+
Sbjct: 1112 KRNEMRQLYDDVRKKRFTEFM---RGFHIITKKLKEMYQ--MITLGGDAELELV--DSMD 1164

Query: 207  PAFHRG 224
            P F+ G
Sbjct: 1165 P-FNEG 1169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,049
Number of Sequences: 2352
Number of extensions: 8670
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38268990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)