Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0465.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical ...   109   7e-25
Z81062-2|CAB02946.1|  269|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl pe...    27   6.3  
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.5 protein.
          Length = 183

 Score =  109 bits (263), Expect = 7e-25
 Identities = 48/67 (71%), Positives = 60/67 (89%)
 Frame = +3

Query: 45  SLFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRG 224
           ++F ++R+MN RQ  YQ L+F M+VSSALMIWKG+MV+TGS+SP+VVVLSGSMEPAF+RG
Sbjct: 8   AMFSEIRQMNIRQLFYQCLNFAMVVSSALMIWKGMMVITGSDSPVVVVLSGSMEPAFYRG 67

Query: 225 DLLFLTN 245
           DLL LTN
Sbjct: 68  DLLLLTN 74



 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/65 (66%), Positives = 51/65 (78%)
 Frame = +2

Query: 254 EPVRVGEIVXFKVXGRDIPIVHRVLKLHEKNNGXVKFLTKGDNNSVDDXXLXAQGQLWLT 433
           +PVRVG+I  FKV GR+IPIVHRV+K+HEK+    K LTKGDNN VDD  L A GQLWL+
Sbjct: 78  DPVRVGDITVFKVEGREIPIVHRVIKVHEKSADNTKILTKGDNNQVDDRGLYAPGQLWLS 137

Query: 434 KKDVV 448
           + DVV
Sbjct: 138 RTDVV 142


>Z81062-2|CAB02946.1|  269|Caenorhabditis elegans Hypothetical
           protein F15A4.2 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 166 LPVTTIKPFHIIKAEDTIIPKLNTWYMNCRLFIRRTSSNRLSNIVNL 26
           +P   ++PFH++     +I ++     N  + I RT+S ++  I  L
Sbjct: 1   MPRYIVRPFHLLNLPTVVISEVLNHLKNIDICILRTTSRKIRTIGKL 47


>AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 7, isoform a protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 99  LSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAF 215
           +SF  I +SA++      V  GS+ P+VVV    +EP F
Sbjct: 363 MSFQKIGNSAILYMLPECVSPGSKFPLVVVPFSGLEPNF 401


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -2

Query: 202 ILPDSTTTIGLSLPVTTIKPFHIIKAEDTIIPKLNTWYMNCRLFIRRTSSNRLSNIVNLI 23
           IL +S   + +    T IK  H+  ++D+++     W+ N  + I  +S +RL   +N+I
Sbjct: 290 ILFESDAMLRIIFRCTNIK--HMTSSDDSVV----AWHQNTWIVITTSSVHRLKLSMNII 343

Query: 22  S 20
           S
Sbjct: 344 S 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,579,403
Number of Sequences: 27780
Number of extensions: 180162
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)